Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47900 520 / 0 Protein of unknown function (DUF1624) AT5G27730 351 / 3e-117 Protein of unknown function (DUF1624) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G159200 [exp] 691 / 0 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.014G123800 [exp] 421 / 2e-144 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.004G176400 [exp] 390 / 4e-133 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.009G136700 [exp] 383 / 2e-130 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624) Potri.006G122500 [exp] 365 / 5e-122 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.013G016900 [exp] 342 / 1e-113 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.005G025200 [exp] 317 / 1e-103 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010030 [exp] 409 / 1e-139 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10027468 [exp] 350 / 1e-117 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10020653 [exp] 335 / 1e-110 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10021514 [exp] 328 / 7e-108 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10039223 [exp] 321 / 3e-106 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10022615 [exp] 321 / 3e-105 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10019798 [exp] 306 / 8e-101 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10036333 [exp] 251 / 3e-80 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624) Lus10014112 [exp] 223 / 7e-68 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10000090 [exp] 156 / 7e-45 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [poplar] [flax] Acyl_transf_3 PF07786 [poplar] [flax] DUF1624 Protein of unknown function (DUF1624)
Representative CDS sequence Show only first row Show all	>Potri.001G071500.1 pacid=42792318 polypeptide=Potri.001G071500.1.p locus=Potri.001G071500 ID=Potri.001G071500.1.v4.1 annot-version=v4.1 ATGGCAGTGTACACGCCTATTAAAGGGCAAGAGGAAGACAATGGAGATAGAAACAAGTCCCTGAAAAGTAACGATGAAGGTGGTCATGTGGATGATGATG AAGCTGTGGATGAAAACAAATCTTTCATCCTCCCTACTCATTCAAGGCAGCAAGATGATGTACAACGACAGAAACAACAACGTCTTGTTTCTCTTGATGT TTTTCGTGGTCTCACTGTTGCGCTAATGATACTTGTGGATGATGCTGGTGGAGTTCTGCCTGCTATTAATCATTCACCATGGAATGGTTTAACACTTGCA GATGTTGTCATGCCATTTTTCCTATTCATTGTCGGTGTTTCGCTTGGACTCACATACAAGAAATTGTCATGCAAAGCTGTTGCAACTAGAAAAGCGATAC TCCGGACACTCAAACTTCTAATTATAGGTCTTTTTCTTCAAGGTGGCTTTTTACATGGTCTGAATGATCTAACTTATGGGGTTGATATGACACAGATAAG ATGGATGGGTATCTTGCAGAGAATAGCAATAGGATATTTAGTAGGGGCAATGTGTGAGATTTGGCTAAAAGGTGGTAATCATGTTACTTCCGGATTATCC ATGCTGAGGAAATATCAGTTTCAATGGGCTGCAGTTTTGATGTTTGTTACTATATATCTTTCCTTGTTATATGGCTTGCATGTTCCTGACTGGGAGTATC AGATTCCAGTTGCTGCCTCTGCTTCCACCCCTAAGATATTTCCAGTGAAATGTGGGGTAAGGGGCCACACAGGACCTGCGTGTAATGCTGGTGGAATGAT TGACCGTACAATCTTGGGAATTCAACACCTGTATAGAAAGCCTATTTATGCACGAACTAAGCCATGTAGTATCAATTCCCCTGGTTATGGCCCGCTACCT CCAGATGCTCCTTCATGGTGTCAGGCTCCTTTTGATCCTGAAGGACTCCTGAGTTCAGTAATGGCCATCGTCACCTGCCTGGTTGGTTTGCACTACGGGC ACATCATTGTCCATTTCAAGGAACACAAGGATAGAACCCTTCACTGGATGGTCCCATCCACTTGTTTTCTAGTCTTGGGTCTGGTCTTGGATTTGCTTGG AATGCATGTTAACAAGGCTCTTTACACATTCAGTTACATGTGTGTCACTGCTGGTGCTGCCGGCATTGTATTTACTGGAATCTACTTACTGGTTGATGTG TGTGGATTCAGGTGGCCGATGTTGGTACTAGAGTGGATGGGAATGCATGCTTTGTTGATTTTTACCCTTGCAACCAGCAATATCTTGCCGGTGGTCCTGC AGGGATTTTATTGGAAGCAGCCTGGAAACAACATTCTTAGGTTTATTGGAATTGGAAGATGA
AA sequence Show only first row Show all	>Potri.001G071500.1 pacid=42792318 polypeptide=Potri.001G071500.1.p locus=Potri.001G071500 ID=Potri.001G071500.1.v4.1 annot-version=v4.1 MAVYTPIKGQEEDNGDRNKSLKSNDEGGHVDDDEAVDENKSFILPTHSRQQDDVQRQKQQRLVSLDVFRGLTVALMILVDDAGGVLPAINHSPWNGLTLA DVVMPFFLFIVGVSLGLTYKKLSCKAVATRKAILRTLKLLIIGLFLQGGFLHGLNDLTYGVDMTQIRWMGILQRIAIGYLVGAMCEIWLKGGNHVTSGLS MLRKYQFQWAAVLMFVTIYLSLLYGLHVPDWEYQIPVAASASTPKIFPVKCGVRGHTGPACNAGGMIDRTILGIQHLYRKPIYARTKPCSINSPGYGPLP PDAPSWCQAPFDPEGLLSSVMAIVTCLVGLHYGHIIVHFKEHKDRTLHWMVPSTCFLVLGLVLDLLGMHVNKALYTFSYMCVTAGAAGIVFTGIYLLVDV CGFRWPMLVLEWMGMHALLIFTLATSNILPVVLQGFYWKQPGNNILRFIGIGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47900			Protein of unknown function (D...		Potri.001G071500 [exp]	0	1
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.005G182700 [exp]	4.89	0.8276	ACO4
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.004G181800 [exp]	7.21	0.8266
					Potri.017G041400 [exp]	8.36	0.7813
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Potri.009G023900 [exp]	9.59	0.6682	ATCS.1
AT1G76240			Arabidopsis protein of unknown...		Potri.005G249500 [exp]	10.81	0.6579
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.009G141500 [exp]	12.72	0.6758
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Potri.003G176300 [exp]	12.96	0.7856
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Potri.003G060000 [exp]	17.40	0.7989
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052600 [exp]	18.43	0.7409
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.004G194600 [exp]	19.79	0.6979	GER2.24

Compare expression of checked genes

Potri.001G071500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.