Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ERF1.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26618 793 / 0 ERF1-3 eukaryotic release factor 1-3 (.1) AT1G12920 789 / 0 ERF1-2 eukaryotic release factor 1-2 (.1) AT5G47880 764 / 0 ERF1-1 eukaryotic release factor 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G159000 [exp] 836 / 0 AT3G26618 785 / 0.0 eukaryotic release factor 1-3 (.1) Potri.014G141000 [exp] 822 / 0 AT3G26618 841 / 0.0 eukaryotic release factor 1-3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032447 [exp] 801 / 0 AT3G26618 843 / 0.0 eukaryotic release factor 1-3 (.1) Lus10042947 [exp] 798 / 0 AT3G26618 839 / 0.0 eukaryotic release factor 1-3 (.1) Lus10014295 [exp] 782 / 0 AT1G12920 811 / 0.0 eukaryotic release factor 1-2 (.1) Lus10026003 [exp] 779 / 0 AT1G12920 808 / 0.0 eukaryotic release factor 1-2 (.1) Lus10038236 [exp] 767 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10025863 [exp] 767 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10028312 [exp] 767 / 0 AT1G12920 798 / 0.0 eukaryotic release factor 1-2 (.1) Lus10041760 [exp] 751 / 0 AT1G12920 783 / 0.0 eukaryotic release factor 1-2 (.1) Lus10031479 [exp] 186 / 1e-55 AT5G47880 192 / 4e-58 eukaryotic release factor 1-1 (.1.2) Lus10028313 [exp] 169 / 4e-51 AT1G12920 171 / 2e-52 eukaryotic release factor 1-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [poplar] [flax] S11_L18p PF03463 [poplar] [flax] eRF1_1 eRF1 domain 1 CL0267 [poplar] [flax] S11_L18p PF03464 [poplar] [flax] eRF1_2 eRF1 domain 2 CL0101 [poplar] [flax] PELOTA PF03465 [poplar] [flax] eRF1_3 eRF1 domain 3
Representative CDS sequence Show only first row Show all	>Potri.001G072000.3 pacid=42790861 polypeptide=Potri.001G072000.3.p locus=Potri.001G072000 ID=Potri.001G072000.3.v4.1 annot-version=v4.1 ATGTCAGACGGTCATGAGACTGATAAGAACATTGAGATTTGGAAGATTAAGAAGCTTATCAAAGCACTGGAAGCTGCCCGAGGTAATGGCACAAGCATGA TTTCCCTTATCATGCCTCCTCGTGATCAGGTTTCTCGTGTCACTAAGATGCTTGGAGATGAGTTTGGAACTGCTTCAAACATTAAGAGCAGGGTCAATCG TCAATCTGTTCTGGGTGCCATTACATCTGCTCAGCAAAGGCTCAAACTTTACAACAAGGTTCCTCCCAATGGGCTTGTGCTTTACACCGGAACAATTGTA ACCGAAGATGGGAAGGAAAAGAAAGTAACTATTGACTTTGAGCCTTTCAGGCCCATAAATGCATCTCTTTACCTCTGTGACAACAAATTTCACACAGAAG CTCTGAATGAACTCTTGGAATCTGATGACAAGTTCGGCTTTATTGTCATGGACGGGAATGGAACTCTTTTTGGGACACTGAGTGGCAACACCAGAGAAGT GCTGCATAAGTTTACCGTTGACCTTCCTAAGAAGCATGGGAGAGGAGGACAGTCTGCTCTTCGATTTGCTCGACTTCGAATGGAGAAGCGCCACAACTAT GTGAGAAAGACAGCAGAACTTGCCACCCAGTTCTATATCAATCCTGCCACCAGCCAGCCTAATGTTTCGGGATTGATACTTGCTGGATCAGCTGACTTCA AGACTGAGCTGAGTCAATCAGATATGTTTGATCCTCGACTTCAGGCAAAAATTCTGAATGTTGTTGATGTTTCCTATGGAGGAGAGAATGGTTTTAATCA GGCAATCGAGCTGTCAGCGGAAATTCTTTCCAATGTGAAATTTATACAGGAGAAGCGCTTGATAGGAAAGTACTTTGAAGAGATAAGTCAGGATACTGGG AAATATGTTTTTGGTGTAGATGACACACTGAAAGCTTTGGAAATGGGTGCTGTTGAAACTTTAATTGTTTGGGAAAGTTTGGATATTAATAGGTACCAGT TGAAAAACTCTGCCACTGGTGAAGTTACCATAAAACATTGGAATAAGGAGCAGGAATCCAACCAGGGCAACTTTAGGGATTCAGTAACCAATGCTGAATT AGAAGTTCAGGATAAGACTCCACTGCTGGAGTGGTTTGCTAACGAGTACAAGCGGTTTGGTTGCTCTCTAGAGTTTGTTACTAACAAATCACAAGAAGGA TCCCAGTTTTGTAGAGGGTTTGGCGGGATTGGTGGGATCCTCCGTTACCAGCTTGATATGAGATCATTTGATGAGCTTTCAGATGAAGAAGTTTATGATG ATTCTGAATAG
AA sequence Show only first row Show all	>Potri.001G072000.3 pacid=42790861 polypeptide=Potri.001G072000.3.p locus=Potri.001G072000 ID=Potri.001G072000.3.v4.1 annot-version=v4.1 MSDGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIV TEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNY VRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTG KYVFGVDDTLKALEMGAVETLIVWESLDINRYQLKNSATGEVTIKHWNKEQESNQGNFRDSVTNAELEVQDKTPLLEWFANEYKRFGCSLEFVTNKSQEG SQFCRGFGGIGGILRYQLDMRSFDELSDEEVYDDSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Potri.001G072000 [exp]	0	1	ERF1.6
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.001G423400 [exp]	1.73	0.7546
AT2G29070			Ubiquitin fusion degradation U...		Potri.001G242200 [exp]	11.83	0.7554
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Potri.014G047200 [exp]	14.00	0.7401
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.005G217500 [exp]	17.66	0.6866
AT3G09300		ORP3B	OSBP(oxysterol binding protein...		Potri.006G086400 [exp]	18.02	0.7409
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.008G095300 [exp]	18.49	0.7389
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.011G050400 [exp]	21.77	0.6529
AT1G11390			Protein kinase superfamily pro...		Potri.004G032800 [exp]	30.98	0.6941
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Potri.008G069200 [exp]	33.54	0.7401
AT4G17650			Polyketide cyclase / dehydrase...		Potri.002G126000 [exp]	36.37	0.7051

Compare expression of checked genes

Potri.001G072000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.