Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09760 329 / 3e-114 U2A' U2 small nuclear ribonucleoprotein A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G158800 [exp] 489 / 9e-177 AT1G09760 283 / 3e-96 U2 small nuclear ribonucleoprotein A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000970 [exp] 345 / 2e-119 AT1G09760 367 / 1e-128 U2 small nuclear ribonucleoprotein A (.1) Lus10028659 [exp] 341 / 2e-118 AT1G09760 365 / 1e-128 U2 small nuclear ribonucleoprotein A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF14580 [poplar] [flax] LRR_9 Leucine-rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G072100.1 pacid=42788286 polypeptide=Potri.001G072100.1.p locus=Potri.001G072100 ID=Potri.001G072100.1.v4.1 annot-version=v4.1 ATGGTGAGACTGACAGCCGACTTGGTTTGGAAAAGCCCTCATTTCTTCAATGCCATCAAGGAGCGCGAATTAGATCTTCGAGGTAACAAGATTCCTGTAA TCGAAAACCTGGGTGCTACTGAGGACCAATTTGATACCATCGATTTGTCTGACAACGAGATTGTCAAGCTTGAAAACATGCCCTATCTTAATCGGCTGGG CACTTTGATAATCAACAACAACAGAATTACCCGTATCAATCCTAACATTGGAGAGTACTTGCCAAAACTTCACACGTTAGTTCTTATAAACAATAGGCTT GTCAATTTGGCAGAGATCGATCCTCTTGCTTCTCTTCCAAAGCTGCATTTCCTTAGTCTTTTGGATAATAACATCACCAAAAAGCCAAATTATAGGCTCT ATGTGATTCACAAACTAAAATCACTCCGGGTTCTTGATTTTAAGAAAGTCAAAGGCAAGGAGAGAGCGGAAGCAGAACATTTGTTTGCATCCAAAGAGGT TGAAGAAGAGGCTAGAAGGGAATCTGTCAAGACATTCACTCCAGGTGAGGTTCCAAATGTTTTAGAAGGTGCCGAGGAACAACAGGCTCCTAAAGTGGTT GCCCCCACACCAGATCAGATTATAGCAATCAAGGCTGCCATTGTCAATTCCCAGACTCTTGAAGAAGTTGCAAGACTTGAGAAGGCATTGAACTCAGGTC AACTTCCTGCAGATCTTAAAATTTTGGATGGTACTGGGTCAAATAGTGTCAAAGAACAAGATGACAAAATGGCTACTGATAATCAAAATGAGGCCGAACC AAACAATTTGGAGGAACAGAAGGATAATGAAGCCACGCCTATGGAACAGGAATAA
AA sequence Show only first row Show all	>Potri.001G072100.1 pacid=42788286 polypeptide=Potri.001G072100.1.p locus=Potri.001G072100 ID=Potri.001G072100.1.v4.1 annot-version=v4.1 MVRLTADLVWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENMPYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLINNRL VNLAEIDPLASLPKLHFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVKGKERAEAEHLFASKEVEEEARRESVKTFTPGEVPNVLEGAEEQQAPKVV APTPDQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLKILDGTGSNSVKEQDDKMATDNQNEAEPNNLEEQKDNEATPMEQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Potri.001G072100 [exp]	0	1
AT5G27990			Pre-rRNA-processing protein TS...		Potri.013G035000 [exp]	1.73	0.8447
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.004G205100 [exp]	2.44	0.8217
AT4G03120			C2H2 and C2HC zinc fingers sup...		Potri.003G058400 [exp]	5.65	0.8346
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.006G275100 [exp]	7.93	0.7993	Pt-AJH1.2
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Potri.013G080200 [exp]	9.38	0.8182
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Potri.014G097300 [exp]	10.09	0.8108
AT3G15351			unknown protein		Potri.002G142000 [exp]	14.66	0.8124
AT4G39150			DNAJ heat shock N-terminal dom...		Potri.004G158300 [exp]	16.73	0.7973
AT5G63480			unknown protein		Potri.012G099200 [exp]	17.49	0.7932
AT5G41970			Metal-dependent protein hydrol...		Potri.003G145900 [exp]	19.44	0.7741

Compare expression of checked genes

Potri.001G072100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.