Plant FIBer expression Database

Potri.001G072200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51980 414 / 5e-144 ARM repeat superfamily protein (.1)
AT3G09350 78 / 1e-15 Fes1A Fes1A (.1.2.3)
AT5G02150 74 / 1e-14 Fes1C Fes1C (.1.2)
AT3G53800 72 / 1e-13 Fes1B Fes1B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G158701
[exp]
348 / 7e-120 AT3G51980 251 / 3e-82 ARM repeat superfamily protein (.1)
Potri.006G088000
[exp]
75 / 1e-14 AT3G09350 516 / 0.0 Fes1A (.1.2.3)
Potri.016G100500
[exp]
74 / 4e-14 AT3G09350 472 / 3e-167 Fes1A (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023269
[exp]
474 / 8e-167 AT3G51980 397 / 4e-137 ARM repeat superfamily protein (.1)
Lus10038535
[exp]
471 / 1e-165 AT3G51980 404 / 1e-139 ARM repeat superfamily protein (.1)
Lus10003961
[exp]
72 / 2e-13 AT3G09350 523 / 0.0 Fes1A (.1.2.3)
Lus10023786
[exp]
71 / 4e-13 AT3G09350 522 / 0.0 Fes1A (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08609 Fes1 Nucleotide exchange factor Fes1
Representative CDS sequence
>Potri.001G072200.1 pacid=42788172 polypeptide=Potri.001G072200.1.p locus=Potri.001G072200 ID=Potri.001G072200.1.v4.1 annot-version=v4.1
ATGGAGCGTGTCGCAATAAGGTTTCTGGTGGCGACGGCAGTGATTTTAGCTGCTGCGGCGGTGATCAGTGGCGAGCTAGTTGATGAAACTTCTGCTACAG
CTGGATTATTATGGTCGACGGGAAAAGACGAGCCTGATCTCTTGAGCAAGGCTGAGCCGGAAAACAGCGACGATTCATCCGCCGCTGCGGTTGTTAATGA
CCATGATGACCTTGACGGCGGGTTTTCTTCTCTCGAGGGGATGTTGCATTGGGCCATTGGGCATTCTGATCCAACGAAATTAAAAGAAAACGCGGAAGAT
GTCCAGCGCCTGTCTGCTAGTGAGTTACAGAAGCGTCAAATAGAACTTAAGGAGTTGATGGAGAAGATGAAAATGCCATCTGATGCAGAGTTGATGCATA
TGGCAATAGATGATTTAAACAATTCTTCTTCATCTTTGGAGGATCGCCAACGTGCGTTGCAGGAGCTTCTCATACTTGTTGAGCCACTTGACAATGCAAA
TGATTTGAACAAACTTGGTGGACTTGCCATAGTAATCCAAGAACTTGATCACCCTGACCATGACATAAGAAGACTTTCTGCTTGGGTTCTCGGAAAAGCT
TGTCAGAATAACGCAGCTGTTCAAAAACAGATTTTGGAACTTGGGGCACTGTCGAAGCTGATAAAGATGGTAAAATCTAGTTCCATAGAAGAAGCCATTA
AGGCACTATATGCTGTTTCAACATTGATCCAAAACCATTTAGCTGGCCAGGAATTTTTTTATGCAGAAGATGGGGATGCAATGCTTCAGGAAATACTGAG
CAACTCAAGCAATGATATCAGACTCCTCAGGAAAGCTGTTTCTGTAGTTGCTGATCTAGCTGAATACCAGTTAGAAAATATAATAAGAGCTGAGTCTCCA
TGCTTCAGAAATCGCTTCTTCCTGAAGTCTGTAGTTGATCTAACAGCATCAACAGATCTTGATCTCCAGGAAAAGGCCCTTGTTGCAGTCAAGAATCTGC
TGCAACTTAAAACAACCGATGCTTTGGTTTTGAAGGATTTGTGTAATTTGGATGGTTCCTTGGAGAGGATGAGGCGGCAGCTGCTAGATTTAATGGCAGA
GGAAGATCATCGGGACTATGCAGTGGATTTGGAAACCCTCAGAGGAGAAGTCGAGCAGATTTTCCATGAAAAGCTAGGAAAGGTGATGAAGGTTCCAACA
TGA
AA sequence
>Potri.001G072200.1 pacid=42788172 polypeptide=Potri.001G072200.1.p locus=Potri.001G072200 ID=Potri.001G072200.1.v4.1 annot-version=v4.1
MERVAIRFLVATAVILAAAAVISGELVDETSATAGLLWSTGKDEPDLLSKAEPENSDDSSAAAVVNDHDDLDGGFSSLEGMLHWAIGHSDPTKLKENAED
VQRLSASELQKRQIELKELMEKMKMPSDAELMHMAIDDLNNSSSSLEDRQRALQELLILVEPLDNANDLNKLGGLAIVIQELDHPDHDIRRLSAWVLGKA
CQNNAAVQKQILELGALSKLIKMVKSSSIEEAIKALYAVSTLIQNHLAGQEFFYAEDGDAMLQEILSNSSNDIRLLRKAVSVVADLAEYQLENIIRAESP
CFRNRFFLKSVVDLTASTDLDLQEKALVAVKNLLQLKTTDALVLKDLCNLDGSLERMRRQLLDLMAEEDHRDYAVDLETLRGEVEQIFHEKLGKVMKVPT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G51980 ARM repeat superfamily protein... Potri.001G072200
[exp]
0 1
AT2G28000 Cpn60alpha1, SL... SCHLEPPERLESS, chaperonin-60al... Potri.004G213400
[exp]
3.00 0.8522 SLP.2
Potri.009G062700
[exp]
3.46 0.7980
AT3G55620 eIF6A, EMB1624 embryo defective 1624, eukaryo... Potri.005G098700
[exp]
4.89 0.8075
AT5G20720 CHCPN10, ATCPN2... CHLOROPLAST CHAPERONIN 10, cha... Potri.006G138600
[exp]
5.09 0.8081 CPN21.1
AT2G04740 ankyrin repeat family protein ... Potri.014G163200
[exp]
10.67 0.6578
Potri.004G194250
[exp]
13.22 0.7731
AT3G12680 C3HZnF HUA1 ENHANCER OF AG-4 1, floral hom... Potri.010G176300
[exp]
13.85 0.6442 HUA1.2
AT5G13200 GRAM domain family protein (.1... Potri.003G165400
[exp]
16.06 0.7598
AT1G23420 YABBY INO, YAB4 INNER NO OUTER, Plant-specific... Potri.008G189000
[exp]
17.66 0.7576
AT3G56500 serine-rich protein-related (.... Potri.002G250700
[exp]
17.83 0.6416

Potri.001G072200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.