Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38040 232 / 2e-71 Exostosin family protein (.1) AT4G16745 206 / 2e-60 Exostosin family protein (.1.2) AT4G32790 193 / 4e-55 Exostosin family protein (.1) AT5G19670 191 / 4e-54 Exostosin family protein (.1) AT3G07620 183 / 3e-52 Exostosin family protein (.1) AT5G03795 182 / 2e-51 Exostosin family protein (.1) AT5G25820 181 / 3e-50 Exostosin family protein (.1) AT5G11610 179 / 3e-50 Exostosin family protein (.1.2) AT3G42180 174 / 7e-49 Exostosin family protein (.1.3) AT5G33290 167 / 6e-46 XGD1 xylogalacturonan deficient 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G036500 [exp] 339 / 3e-112 AT4G38040 275 / 9e-88 Exostosin family protein (.1) Potri.005G147500 [exp] 242 / 3e-75 AT4G38040 653 / 0.0 Exostosin family protein (.1) Potri.007G058400 [exp] 236 / 6e-73 AT4G38040 649 / 0.0 Exostosin family protein (.1) Potri.007G117800 [exp] 216 / 1e-65 AT4G38040 385 / 4e-132 Exostosin family protein (.1) Potri.015G087900 [exp] 204 / 7e-61 AT4G38040 352 / 8e-119 Exostosin family protein (.1) Potri.006G238900 [exp] 202 / 2e-57 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.007G117600 [exp] 193 / 4e-57 AT4G38040 341 / 5e-115 Exostosin family protein (.1) Potri.003G079000 [exp] 192 / 4e-55 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.018G085500 [exp] 194 / 5e-55 AT5G19670 693 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002664 [exp] 241 / 5e-75 AT4G38040 677 / 0.0 Exostosin family protein (.1) Lus10012723 [exp] 240 / 1e-74 AT4G38040 674 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 192 / 2e-55 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10039142 [exp] 189 / 1e-53 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 185 / 3e-53 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 182 / 4e-53 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10005186 [exp] 185 / 9e-53 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10043239 [exp] 185 / 7e-52 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 182 / 3e-51 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10011120 [exp] 176 / 7e-49 AT4G32790 501 / 1e-172 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.001G072500.1 pacid=42791822 polypeptide=Potri.001G072500.1.p locus=Potri.001G072500 ID=Potri.001G072500.1.v4.1 annot-version=v4.1 ATGAACTGTCCATATAAATCCGTACTTATCTCTCAACACTTGCCACTGTCTCCAAAAAAAAATAGAGAAAGGAGGATGAAGATGAAAAGGCCACCTAAAC TGCAGCTGAAGCGATTACTGGGTATGCTTGTGTTAGCAGTGTTACTGTCCTCTTCTTGCATTGCTCTTTTTGGGTTTTACAAACACCACGCTTCCCTTGC AGTAACATCCCTTGTTGCCCCACAAAGCACCACCTTCTATCCAATCCAAAACCACCACCACCACGACCGTCAAAACCTGTCTCTAAATGCCCCACAACAG GCGGCTACCCTTTTTCCGCCACCACAAACAAATACCGTGGACTCCGTATTGGAAACAGGGCCATATCATAATTGGGAACTGTTTGCTGCTGATTTTCAAG AAATGATGCGGCATCTAAAGATCTTTGTGTACCCCGATACCTTCAACAGGAGCAGCCCTTTTGCTAATATTTTCCTACCCCATGAGAACCCACTGAACAA TCCAAAACTGGGTAATTACTTCAGTGAACACATGTTCAAGGTGTCCCTGCTTCACAGTCCACTGCTTACTGCAACACCAGAGAAAGCCCATTTCTTTTTC CTCCCATTTTCAATAAACGACCTTAGAAATGACCCTCGAGTTCACTCCGAGGCAAAAATCTCACAATTTGTTGCCCAATACACGAGTAGCATTAGCAGCA GCTTCAGGTTTTGGAATGCTTCAGGAGGTGCTGATCATTTCTATGTTTGTTGCCATTCTGTTGGGAGAGAGGCTCCCTCCAGGCATCATGGTTTGCGTAA CAATGCCATTCAGCTTACTTGTTGTTCTAGTTACTTTCAAAGATTCTATCTTTCCCACAAAGATGTGGGGCTCCCTCAAGTTTGGCCTCGCACGGATCAG ACTGCCTTGAATCCCCCACATGCCAGGCATAGACTTGTCTACTTTGCTGGACGCGTCCAAAATTCTCAAGTCCGGCAGCAGCTGGTAAATTTGTGGGGAA ATGATACTCAATTTGACATATTTAATGGGAACCCCACATTCCCTTATGAAGAAGGGTTTAAGAGGAGTAAATTCTGCCTCCATGTTAAAGGTTATGAAGT GAACACCGCAAGGGTTAGTGATGCCATACACTACGGGTGCATTCCAGTTATAATTTCTAATTATTACGACCTTCCATTTGCTAATGTCTTGGACTGGAGC AAGTTTTCCGTTGTCATCAATCAACGAGATATTGCTTTCTTGAAAACAAAATTGTTGTCTATAAAAAGAGAGATGTACCTGAGAATGTATCATAATCTCT TCAAAGTTAGGAGGCACTTTGTTTGGCATACAACGCCAAGGGGCTATGATTCCTTTTATATGACTGCTTATCAGTTATGGTTAAGGAGAAGCACTCTCCG TTTATCATATTAA
AA sequence Show only first row Show all	>Potri.001G072500.1 pacid=42791822 polypeptide=Potri.001G072500.1.p locus=Potri.001G072500 ID=Potri.001G072500.1.v4.1 annot-version=v4.1 MNCPYKSVLISQHLPLSPKKNRERRMKMKRPPKLQLKRLLGMLVLAVLLSSSCIALFGFYKHHASLAVTSLVAPQSTTFYPIQNHHHHDRQNLSLNAPQQ AATLFPPPQTNTVDSVLETGPYHNWELFAADFQEMMRHLKIFVYPDTFNRSSPFANIFLPHENPLNNPKLGNYFSEHMFKVSLLHSPLLTATPEKAHFFF LPFSINDLRNDPRVHSEAKISQFVAQYTSSISSSFRFWNASGGADHFYVCCHSVGREAPSRHHGLRNNAIQLTCCSSYFQRFYLSHKDVGLPQVWPRTDQ TALNPPHARHRLVYFAGRVQNSQVRQQLVNLWGNDTQFDIFNGNPTFPYEEGFKRSKFCLHVKGYEVNTARVSDAIHYGCIPVIISNYYDLPFANVLDWS KFSVVINQRDIAFLKTKLLSIKREMYLRMYHNLFKVRRHFVWHTTPRGYDSFYMTAYQLWLRRSTLRLSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38040			Exostosin family protein (.1)		Potri.001G072500 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.010G018200 [exp]	9.79	0.7940
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Potri.016G111000 [exp]	10.77	0.8359
AT5G04700			Ankyrin repeat family protein ...		Potri.002G048666 [exp]	12.48	0.7866
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.011G106200 [exp]	12.96	0.7832
AT4G15620			Uncharacterised protein family...		Potri.001G323700 [exp]	13.63	0.8320
AT1G10460		GLP7	germin-like protein 7 (.1)		Potri.010G038200 [exp]	17.60	0.7882
AT5G23750			Remorin family protein (.1.2)		Potri.003G124400 [exp]	18.00	0.7921
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.003G066300 [exp]	20.78	0.8169
AT1G55550			P-loop containing nucleoside t...		Potri.001G000800 [exp]	23.62	0.7336
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	27.27	0.8134

Compare expression of checked genes

Potri.001G072500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.