Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) AT3G08970 71 / 1e-13 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39960 71 / 2e-13 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 70 / 3e-13 DNAJ heat shock family protein (.1) AT1G80030 68 / 1e-12 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT1G28210 67 / 3e-12 ATJ1 DNAJ heat shock family protein (.1.2) AT5G18140 66 / 5e-12 Chaperone DnaJ-domain superfamily protein (.1) AT1G68370 66 / 6e-12 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 66 / 6e-12 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G24120 64 / 3e-11 ARL1 ARG1-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073900 [exp] 73 / 3e-14 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 72 / 5e-14 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G160200 [exp] 70 / 3e-13 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.016G120000 [exp] 70 / 3e-13 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G036200 [exp] 68 / 9e-13 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.008G123200 [exp] 67 / 2e-12 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.019G035100 [exp] 67 / 3e-12 AT5G18140 225 / 3e-71 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 66 / 5e-12 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.002G198000 [exp] 65 / 7e-12 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016510 [exp] 344 / 3e-119 AT5G59610 252 / 2e-83 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10040777 [exp] 342 / 1e-118 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10023122 [exp] 71 / 1e-13 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10000631 [exp] 71 / 2e-13 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10011484 [exp] 71 / 2e-13 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10002852 [exp] 70 / 4e-13 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10023148 [exp] 69 / 5e-13 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10023181 [exp] 69 / 6e-13 AT5G03160 507 / 2e-178 homolog of mamallian P58IPK (.1) Lus10015078 [exp] 69 / 7e-13 AT5G03160 638 / 0.0 homolog of mamallian P58IPK (.1) Lus10003380 [exp] 69 / 7e-13 AT3G08970 615 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.001G072700.1 pacid=42789354 polypeptide=Potri.001G072700.1.p locus=Potri.001G072700 ID=Potri.001G072700.1.v4.1 annot-version=v4.1 ATGCATGGATTTACCGTCCGTCCAACACCACACAGCAGCCTCTTCTGTCTCACTGGCCTGTCTTCAAGATCTCTTCTTTACCTACAAAATAAAGCTAAAC TATCAACACCCAGTTGCAGATACAGCTATGGAGGTGGTTTTAGCCTTATTTTTTTTGGACCCAGTGTATTCGCTCCAGTCTTCAAGAATAGGAGAAGATA CAGTCATACCCTTTTGAGAGCAAGTCGTAGAGAGTCTCCTTATGAAGTTTTAGGCGTTTCTCCTTCTGCCCCTCCTGGTGAAATCAAAAGAGCTTATAGG AAACTTGCTTTAAAGTATCACCCTGATGTTAATAAAGAGACAAATGCTCAGGAGAAATTTATGAGGATTAAGCACGCATACAACACATTGCTGAATTCTG AATCTCGGAGAAAGTATGATGCTGGAAACTCATCTGGTTTTTCATACTCTAGTGGTCAGAAAACACAAAGCAGCAGTACCCAAGATGAAGAAGAATTTTA TGGACTTGGTAATTTTATGAGGGATTTTCAGATAACAATAGGGGACTTCTTTAGGGATCTGCAAGAAGAATTCCAGAATTGGGAAGCCAGCGCTCCATCT CAAGGGAAGCCAAAGAGCCTATGGGAAGAATTGGCAGAAATAGGGGAAGAATTTGTCGAATTCCTAGAGAAAGAGCTCAACATAACAGATACAGAATTTG AAGGAAATAAAAATGATGGATTTCAAGAAGATGATTTTTTTTCCAGTTCTAGCACCAAGAGAACGGGAAATGGTGCTCAAAATGAAGATGGCAAGAGTAG CAGCATCGAAGATAACATTGATGAGATTGAAGCTACTCTTGCTAAGTTGAAAAGGGAATTGGGCTTATAG
AA sequence Show only first row Show all	>Potri.001G072700.1 pacid=42789354 polypeptide=Potri.001G072700.1.p locus=Potri.001G072700 ID=Potri.001G072700.1.v4.1 annot-version=v4.1 MHGFTVRPTPHSSLFCLTGLSSRSLLYLQNKAKLSTPSCRYSYGGGFSLIFFGPSVFAPVFKNRRRYSHTLLRASRRESPYEVLGVSPSAPPGEIKRAYR KLALKYHPDVNKETNAQEKFMRIKHAYNTLLNSESRRKYDAGNSSGFSYSSGQKTQSSSTQDEEEFYGLGNFMRDFQITIGDFFRDLQEEFQNWEASAPS QGKPKSLWEELAEIGEEFVEFLEKELNITDTEFEGNKNDGFQEDDFFSSSSTKRTGNGAQNEDGKSSSIEDNIDEIEATLAKLKRELGL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59610			Chaperone DnaJ-domain superfam...		Potri.001G072700 [exp]	0	1
AT5G55210			unknown protein		Potri.001G356400 [exp]	1.00	0.9570
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.006G166300 [exp]	1.73	0.9549
AT4G16580			Protein phosphatase 2C family ...		Potri.005G125700 [exp]	3.16	0.9419
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.016G001400 [exp]	5.91	0.9501
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	6.16	0.9559
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Potri.013G077000 [exp]	8.94	0.9504
AT4G14910		HISN5B, IGPD	HISTIDINE BIOSYNTHESIS 5B (.1....		Potri.010G087600 [exp]	11.48	0.9398
AT1G26180			unknown protein		Potri.008G109700 [exp]	12.36	0.9247
AT4G25370			Double Clp-N motif protein (.1...		Potri.015G131700 [exp]	12.48	0.9394
AT3G60590			unknown protein		Potri.014G061000 [exp]	16.58	0.9402

Compare expression of checked genes

Potri.001G072700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.