Plant FIBer expression Database

Potri.001G073000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G44600 331 / 1e-112 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
AT5G44590 321 / 1e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
AT5G63100 132 / 1e-35 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G082432
[exp]
165 / 1e-47 AT5G63100 360 / 8e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Potri.001G317700
[exp]
44 / 0.0002 AT2G31740 886 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038404
[exp]
363 / 3e-125 AT5G44600 301 / 7e-101 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10001217
[exp]
233 / 2e-74 AT5G44600 197 / 1e-60 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10015621
[exp]
166 / 1e-48 AT5G63100 333 / 3e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Lus10037637
[exp]
164 / 2e-48 AT5G63100 323 / 7e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G073000.8 pacid=42788996 polypeptide=Potri.001G073000.8.p locus=Potri.001G073000 ID=Potri.001G073000.8.v4.1 annot-version=v4.1
ATGATATCGTTGTTTTCTGCAACAAATCCCTTGCTGACATGGTCACCATCGTCAACCCCAACAAGAATCAGTTACTCTCAGACACTTCGGCGGTGTTGTA
CCTCTAGAACTACAAATGCGTTGTCGTTTCCTATTCCTTTCTCATTAACTTGTTCCCGTCTTACACAAAAACCAAATGCTCATACCACTACTAATCTTCA
GGTCCAGGGTTCTTCTTCTGATTCTAATAAAGAAGAGCAGGAAGAAGAGTATAAGGTATTGACAGCAGTGAAAAGTCAGTACAATGACATTCTAATCGTT
GACACTCCTAAAACCAGGATGCTGCTCCTCGACTCCACTCATAATGTTCATAGCCTTCTTTACAAGGATGGTCAGAAATGGACTCGTTCATATTGGGATG
AATTTGCTAGTTTGCCAGCTATTATTCCACAAGGTCCCGTTGCAATATTTGGCCTGGGTGGTGGTACAGCTGCGCATTTGATGCTTGATGTGTGGCCTTC
ATTGCAGCTTGAAGGTTGGGAAATAGATGAAATTTTGATCAATAAAGCAAGAGATTATTTTGGGCTATCGGATCTTGAGAAGCAAACTCAAGCTGGTGGC
ATGCTTCATGTTGTTGTTGGTGATGCCCTATGTTCCTTGGAAGATGATGGTAGAAAATATGCTGGCATTGTCATTGACCTGTTCTATGGGGGGAAGGTTT
TGCCACAGTTACAAGAGGTAGCAACTTGGTTGGAACTGAAGGGTAGATTGATACCTAATGGTCGCCTTATGGTGAACTGTGGAGGCATTGAAGAATCAGA
TGCTATAAATGAAAGAATCAGTACTAAATCAGTTGATAATGCTTGGGTTGAAAATCCAACCATCAAGGTTTTGTGTGAAGCATTTCCTGGACAACTAAGC
TGGAAGAGAGTTCCAGAGAGTGAAGGTGCAAATTATCTTGCATTGACGGGACCCTTGCCTGATTTGACCTCATGGTCTGCTATGGTCCCAGACCATTTGA
GTGCAGCTGTTAGCAAATGGAGGCCTTGCAGCCCTCTTCCATGA
AA sequence
>Potri.001G073000.8 pacid=42788996 polypeptide=Potri.001G073000.8.p locus=Potri.001G073000 ID=Potri.001G073000.8.v4.1 annot-version=v4.1
MISLFSATNPLLTWSPSSTPTRISYSQTLRRCCTSRTTNALSFPIPFSLTCSRLTQKPNAHTTTNLQVQGSSSDSNKEEQEEEYKVLTAVKSQYNDILIV
DTPKTRMLLLDSTHNVHSLLYKDGQKWTRSYWDEFASLPAIIPQGPVAIFGLGGGTAAHLMLDVWPSLQLEGWEIDEILINKARDYFGLSDLEKQTQAGG
MLHVVVGDALCSLEDDGRKYAGIVIDLFYGGKVLPQLQEVATWLELKGRLIPNGRLMVNCGGIEESDAINERISTKSVDNAWVENPTIKVLCEAFPGQLS
WKRVPESEGANYLALTGPLPDLTSWSAMVPDHLSAAVSKWRPCSPLP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G44600 S-adenosyl-L-methionine-depend... Potri.001G073000
[exp]
0 1
AT2G36145 unknown protein Potri.006G210000
[exp]
3.87 0.9761
AT4G17070 peptidyl-prolyl cis-trans isom... Potri.014G051300
[exp]
4.35 0.9601
AT3G61080 Protein kinase superfamily pro... Potri.002G153100
[exp]
7.07 0.9711
AT3G23760 unknown protein Potri.018G096056
[exp]
7.07 0.9571
AT1G03630 PORC ,POR C protochlorophyllide oxidoreduc... Potri.013G135500
[exp]
7.14 0.9710 Pt-POR.2
AT3G29670 PMAT2 phenolic glucoside malonyltran... Potri.004G096132
[exp]
7.34 0.9657
AT5G55740 CRR21 chlororespiratory reduction 21... Potri.006G155400
[exp]
8.12 0.9660
AT3G04310 unknown protein Potri.010G063300
[exp]
8.24 0.9609
AT4G17740 Peptidase S41 family protein (... Potri.008G173900
[exp]
8.48 0.9645
AT4G22890 PGR5-LIKEA, PGR... PGR5-LIKE A (.1.2.3.4.5) Potri.003G119200
[exp]
8.71 0.9679

Potri.001G073000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.