Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30820 901 / 0 CTP synthase family protein (.1) AT3G12670 883 / 0 EMB2742 embryo defective 2742, CTP synthase family protein (.1) AT4G20320 871 / 0 CTP synthase family protein (.1.2) AT2G34890 799 / 0 CTP synthase family protein (.1) AT4G02120 754 / 0 CTP synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G157900 [exp] 1091 / 0 AT1G30820 910 / 0.0 CTP synthase family protein (.1) Potri.010G176500 [exp] 935 / 0 AT3G12670 935 / 0.0 embryo defective 2742, CTP synthase family protein (.1) Potri.008G080100 [exp] 933 / 0 AT3G12670 929 / 0.0 embryo defective 2742, CTP synthase family protein (.1) Potri.014G123200 [exp] 779 / 0 AT4G02120 918 / 0.0 CTP synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001218 [exp] 852 / 0 AT1G30820 894 / 0.0 CTP synthase family protein (.1) Lus10038403 [exp] 848 / 0 AT1G30820 897 / 0.0 CTP synthase family protein (.1) Lus10025042 [exp] 568 / 0 AT4G02120 689 / 0.0 CTP synthase family protein (.1) Lus10010020 [exp] 517 / 2e-179 AT4G02120 624 / 0.0 CTP synthase family protein (.1) Lus10025043 [exp] 206 / 1e-63 AT4G02120 289 / 1e-96 CTP synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06418 [poplar] [flax] CTP_synth_N CTP synthase N-terminus CL0014 [poplar] [flax] Glutaminase_I PF07722 [poplar] [flax] Peptidase_C26 Peptidase C26
Representative CDS sequence Show only first row Show all	>Potri.001G073100.8 pacid=42792153 polypeptide=Potri.001G073100.8.p locus=Potri.001G073100 ID=Potri.001G073100.8.v4.1 annot-version=v4.1 ATGAACAAAGGAGGGGGGATGAAGAAAATGAAGTACGTGTTGGTTACTGGAGGAGTAGTGAGTGGACTTGGGAAAGGAGTGACAGCAAGTAGTATTGGTG TTCTTCTTAAGGCCTGTGGACTTCGTGTTACTTCTATCAAGATTGATCCATACTTAAACACTGATGCCGGAACAATGTCACCCTTTGAGCATGGAGAAGT GTATGTCCTAGATGATGGTGGAGAGGTGGACCTGGACCTTGGAAATTATGAGAGGTTTCTAGATATCAAGTTGACACGCGATAATAATATCACTACCGGA AAGATTTACCAGGCTGTTATTGACAAAGAAAGAAGGGGAGATTATCTGGGAAAAACTGTGCAGGTTGTCCCTCACATCACAGATGCCATTCAAGAGTGGA TTGAACGCGTGGCATTGATACCAGTTGACGGACAGCCTGGTCCCGCTGACGTTTGTGTCATTGAATTGGGTGGAACTATAGGAGATATTGAGTCCATGCC ATTTACTGAGGCTCTAGGACAGTTTTCATACCGAGTGGGCGCTGGCAACTTCTGCTTGATTCATGTCAGCCTTGTGCCTGTTATAAGTGCTGTTGGTGAA CAGAAAACAAAACCAACTCAGCACAGTGTTCGGGGGCTGAGAAGCTTAGGTTTGACACCAAATATCTTAGCTTGTCGCAGCACATCGGCACTTGAAGAGA ACGTAAAGCAGAAACTCTCTCAATTTTGCCATGTCCCAGCAGAAAATATCATCACTCTCTATGATGTTCCCAACATCTGGCACCTTCCTTCGCTTTTAAG AGATCAGAAGGCTCACGAAGGAATTTTGGGAGCGCTGAACCTTCCTGGGTTTGTCAACGTTGCCAGGGAGCCTAATTTAAAGGAATGGACCTCTAGGGCT GAATTCTGCGACATGTTACTTGAACCAGTTCGAATTGCCGTTGTTGGGAAGTATACAGGGCTTTCAGATTCCTACCTTTCTTTGCTAAAGGCTCTTTTGC ATGCATCTGTTTCTCTCCGCAAGAAACTTGTTGTGGATTGGGTTCCAGCTAGCGATATTGAGGATGAAACTGCAAGAGAGAATCCTGATGCATATAAGGC TGCATGGAAGTTGTTAAAGGGTGCAGATGGAGTTCTTGTCCCAGGAGGGTTTGGTGACAGAGGTGTGGAAGGGAAAATTCTTGCAGCCAAGTATGCGCGA GAGAACAGAATTCCATTCCTTGGAATCTGTCTGGGAATGCAAATCGCAGTCATTGAGTTTGCACGATCTATCCTTGGCCTGCACGATGCTAACAGCACGG AATTTGATCCTGACACCAAGAGTCCCTGCGTTGTATTCATGCCCGAGGGCTCAAAAACCCACCTGGGAGGCACCATGCGTCTTGGGTCAAGGAGGACATA TTTCCAAGTCATGGACTCCAAATCAGCGAAATTGTACGGCAATAGAGGTTTTGTTGATGAGAGACATCGTCATAGATACGAGGTGAATCCTGATATGGTA TCATCCCTGGAAGATGCTGGGCTCTCATTCACCGGCAAGGATGAAACTGGCCAACGCATGGAGATAGTTGAGCTGCCTAATCATCCTTACTATATTGGTA CTCAATTCCACCCTGAATTCAAGTCAAGACCAGGGAAACCTTCTGCACTATTCTTAGGCCTGATAGCAGCAGCATGTGGCCAGCTAGATCCTCTCCTACA CACTCACAAGTTTCCCAATGGAATGGCCAAAAAAATAAGCCTCTACCAGAATGGAAATGCAACCAAGTTTGCTAAAATACCGGCAGACGGTATATACAGC AATTGCAATGGTGTGCATGCCTAA
AA sequence Show only first row Show all	>Potri.001G073100.8 pacid=42792153 polypeptide=Potri.001G073100.8.p locus=Potri.001G073100 ID=Potri.001G073100.8.v4.1 annot-version=v4.1 MNKGGGMKKMKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVYVLDDGGEVDLDLGNYERFLDIKLTRDNNITTG KIYQAVIDKERRGDYLGKTVQVVPHITDAIQEWIERVALIPVDGQPGPADVCVIELGGTIGDIESMPFTEALGQFSYRVGAGNFCLIHVSLVPVISAVGE QKTKPTQHSVRGLRSLGLTPNILACRSTSALEENVKQKLSQFCHVPAENIITLYDVPNIWHLPSLLRDQKAHEGILGALNLPGFVNVAREPNLKEWTSRA EFCDMLLEPVRIAVVGKYTGLSDSYLSLLKALLHASVSLRKKLVVDWVPASDIEDETARENPDAYKAAWKLLKGADGVLVPGGFGDRGVEGKILAAKYAR ENRIPFLGICLGMQIAVIEFARSILGLHDANSTEFDPDTKSPCVVFMPEGSKTHLGGTMRLGSRRTYFQVMDSKSAKLYGNRGFVDERHRHRYEVNPDMV SSLEDAGLSFTGKDETGQRMEIVELPNHPYYIGTQFHPEFKSRPGKPSALFLGLIAAACGQLDPLLHTHKFPNGMAKKISLYQNGNATKFAKIPADGIYS NCNGVHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30820			CTP synthase family protein (....		Potri.001G073100 [exp]	0	1
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Potri.009G109800 [exp]	1.41	0.8927
AT2G42560			late embryogenesis abundant do...		Potri.019G090300 [exp]	7.41	0.8937
AT3G63240			DNAse I-like superfamily prote...		Potri.005G212700 [exp]	9.79	0.8734
AT1G02460			Pectin lyase-like superfamily ...		Potri.005G005500 [exp]	13.26	0.8229
AT4G03540			Uncharacterised protein family...		Potri.004G043300 [exp]	13.74	0.8831
					Potri.017G080900 [exp]	14.14	0.8823
AT1G33250			Protein of unknown function (D...		Potri.001G454600 [exp]	17.74	0.7567
AT3G06520			agenet domain-containing prote...		Potri.010G149301 [exp]	18.00	0.7467
AT4G31830			unknown protein		Potri.006G183800 [exp]	18.02	0.8511
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.005G006800 [exp]	18.33	0.8802

Compare expression of checked genes

Potri.001G073100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.