Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARPC2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30825 449 / 7e-160 DIS2, ARPC2, ARPC2A DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) AT2G33385 219 / 7e-69 ARPC2B actin-related protein C2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G157700 [exp] 566 / 0 AT1G30825 429 / 5e-152 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Potri.010G067100 [exp] 226 / 1e-71 AT2G33385 410 / 5e-143 actin-related protein C2B (.1.2) Potri.008G170800 [exp] 225 / 9e-71 AT2G33385 410 / 2e-142 actin-related protein C2B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008071 [exp] 466 / 2e-166 AT1G30825 456 / 6e-163 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Lus10002867 [exp] 239 / 2e-77 AT1G30825 223 / 1e-71 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Lus10023737 [exp] 213 / 2e-66 AT2G33385 397 / 1e-137 actin-related protein C2B (.1.2) Lus10011780 [exp] 144 / 3e-39 AT2G33385 228 / 9e-71 actin-related protein C2B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04045 [poplar] [flax] P34-Arc Arp2/3 complex, 34 kD subunit p34-Arc
Representative CDS sequence Show only first row Show all	>Potri.001G073300.1 pacid=42788708 polypeptide=Potri.001G073300.1.p locus=Potri.001G073300 ID=Potri.001G073300.1.v4.1 annot-version=v4.1 ATGATTTTGTTGCAGTCCCAATCCAGATTTCTCCTTCAAACATTATTAAATCGTGTACAAAATCTTGAAAAAGCAGTTGAACTGGATTACCTTTGGGTGG AGTTTAGTGATGTTCGTTACCATATTCTGGTGTCAACGAAGAATCCAAATGTTTTGCTGTTATCCGTTTCATTACCAACTCCACCTCCAGAAGCTGTTTT CATTGGTGGACTTCCGGGTGGAGCCATTGAAGCTATAAAGGCTGCTTATGGTGTGGTTGTACATATTCTTGATCCTCCCAGAGATGGCTTTAACCTCACT TTGAAACTCAATTTGGCGAAACTTCCACCTGATGAAGAGCACAGGTATGCTCTCTTGGTAAAGATTGCATCTGTTAGGGAAGTGGTTCTAGGTGCTCCAT TAAGAGTAGTTTTAAAACATCTTGCATCAAGGACTGTTGTTCCTGATGTAGATCGGGTGCTGGCTCTTGTGCATCGGCCAAAGGAGTCTTTCTTCCTTGT TTCTCAGCCAGACAAGGTTACCGTGGTGTTTCCTATGAGATTCAAGGACTCCATAGATACTGCTTTTGCCACATCCTTCCTTCAGGAATTTGTCGAAGCC AGGCGTGCAGCTGGACTTAATAATGCTCCTCCTTGCTTGTGGTCTCCTACTCCCCCGCTTGAATTGAATGAAGCTCCTGCAGAAGCATTGTCTGCAAATG CAGGATTTGTTTCTTTTGTCATTTTTCCTCGTCATGTGGAAGGCAAAAAGCTGGACAGAACAGTGTGGAATTTATCAACATTTCATGCATATGTTAGTTA TCATGTTAAGTGCTCGGAGGGTTTTATGCATACTCGCATGCGAAGACGTGTAGAGTCTCTTATTCAGGCTTTGGATCGTGCAAAACCAGGTGGAGAGGAG AAAAAGAAATCACCGAATAGCAGATCTTTTAAACGGCTGAGCCTCAGTGAAGCTCGAGCTAATTCAATTTCTTAA
AA sequence Show only first row Show all	>Potri.001G073300.1 pacid=42788708 polypeptide=Potri.001G073300.1.p locus=Potri.001G073300 ID=Potri.001G073300.1.v4.1 annot-version=v4.1 MILLQSQSRFLLQTLLNRVQNLEKAVELDYLWVEFSDVRYHILVSTKNPNVLLLSVSLPTPPPEAVFIGGLPGGAIEAIKAAYGVVVHILDPPRDGFNLT LKLNLAKLPPDEEHRYALLVKIASVREVVLGAPLRVVLKHLASRTVVPDVDRVLALVHRPKESFFLVSQPDKVTVVFPMRFKDSIDTAFATSFLQEFVEA RRAAGLNNAPPCLWSPTPPLELNEAPAEALSANAGFVSFVIFPRHVEGKKLDRTVWNLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQALDRAKPGGEE KKKSPNSRSFKRLSLSEARANSIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Potri.001G073300 [exp]	0	1	Pt-ARPC2.2
AT1G11660			heat shock protein 70 (Hsp 70)...		Potri.004G016700 [exp]	9.48	0.6846
					Potri.008G024601 [exp]	14.56	0.7441
AT4G16180			unknown protein		Potri.008G104100 [exp]	19.89	0.7368
AT1G49180			protein kinase family protein ...		Potri.019G007200 [exp]	25.88	0.7009
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Potri.007G067000 [exp]	29.05	0.7287
AT2G26800			Aldolase superfamily protein (...		Potri.006G036800 [exp]	37.66	0.6121
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.001G135950 [exp]	38.02	0.7133
AT4G24900			unknown protein		Potri.015G096700 [exp]	41.66	0.7035
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.008G216800 [exp]	43.42	0.6424
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Potri.015G116700 [exp]	46.47	0.6176

Compare expression of checked genes

Potri.001G073300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.