Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20300 226 / 3e-71 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT1G55340 117 / 2e-31 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G03880 104 / 2e-26 Protein of unknown function (DUF1639) (.1) AT3G60410 68 / 1e-12 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) AT1G25370 62 / 9e-11 Protein of unknown function (DUF1639) (.1) AT4G17440 60 / 3e-10 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT1G68340 46 / 2e-05 Protein of unknown function (DUF1639) (.1) AT3G18295 42 / 0.0004 Protein of unknown function (DUF1639) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G157500 [exp] 609 / 0 AT4G20300 201 / 2e-61 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.001G004000 [exp] 113 / 1e-29 AT1G55340 268 / 4e-92 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.019G035300 [exp] 112 / 7e-29 AT1G55340 232 / 9e-78 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.013G057600 [exp] 110 / 2e-28 AT1G55340 212 / 1e-69 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.003G221000 [exp] 108 / 9e-28 AT1G55340 261 / 3e-89 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.018G059200 [exp] 107 / 2e-26 AT1G55340 133 / 3e-38 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.006G233100 [exp] 103 / 3e-25 AT1G55340 130 / 9e-37 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Potri.002G136200 [exp] 62 / 1e-10 AT3G60410 109 / 6e-28 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.014G044800 [exp] 62 / 2e-10 AT3G60410 105 / 6e-26 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036240 [exp] 343 / 4e-116 AT4G20300 217 / 3e-67 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10038379 [exp] 183 / 2e-56 AT4G20300 188 / 1e-58 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010650 [exp] 103 / 9e-27 AT1G55340 148 / 3e-46 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010312 [exp] 103 / 5e-26 AT1G55340 254 / 1e-86 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10013616 [exp] 72 / 4e-16 AT1G55340 111 / 1e-32 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10004378 [exp] 65 / 2e-11 AT4G17440 96 / 4e-23 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010984 [exp] 57 / 4e-09 AT3G60410 89 / 3e-20 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10013412 [exp] 52 / 7e-08 AT1G55340 165 / 1e-52 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10040176 [exp] 48 / 4e-06 AT3G60410 76 / 1e-16 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10035144 [exp] 48 / 5e-06 AT1G25370 87 / 2e-20 Protein of unknown function (DUF1639) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [poplar] [flax] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Potri.001G073400.1 pacid=42790803 polypeptide=Potri.001G073400.1.p locus=Potri.001G073400 ID=Potri.001G073400.1.v4.1 annot-version=v4.1 ATGATGAGGTATCAGAGAGTAAGCCCAGATTGTGTTCCTTTAAGCAATGGCAAAAAACCCAATGGAGTTGAGAATGGAAGGTCAATCCCAAATGGATTCA GTTCCACAAGTACTAATTTTGAAACTAAAGCTTTCAGATTTAGATCCCCATCGAGAAACCAAGACCACCACAATAACAGTACAACCAGTCCTCCACATTC AGATAACAGCCACAATCACACACAAAGACATGGCACCAGTCCAAGTCCTAGCCCAAGCCGTGTTGGCAACGGTGACGTGCTGTTGCAATGGGGACAAAAG AAGAGAGCTAGAGTTTCAAGGTCTGAGATCAGGGCCTTTCCTGATGAATCGTCATCTTCTGGTCAAGCTAGACAACCCATCAACAAGATTCCTAGGAGAG TTGATAATAAGCTCTCTCCATCGTCCATGCCACCACCGCCTCCACCACCATCATCCCAACAACAATCTACCAGTACTAATACCAGAGGTGGAAACTTAAA GAAAGAAAATTCTGGGATTCTTTCTCACAGGAATTTAGAAAAGCGATCGGGTGCTGGTAATGGGTCCCCATCAAGAAATAGTGGTGGCAGTGGCAAGGTT GTTTCTAGATCTACTGCAGGAAAGAGATCTCCTCCAACACCAGAAAATATTGATAGAAAGATGCCTAGCTCTAGGTCAGCAGCAAAAGATGAGAAACCAA ATGGATCCATAGTAGTAGCCGATCATCAAACGAGGCAAGTTGATTCCACTCGGGCTCAATCAGAAAAGGAAGCCGGGGCTACAAATAGTAACCCTGCCTC AGTACCAGTAGTAGCTAGCGGAGGAGAAAAGGTGAATAACAATGAAGTCATTGAGTGGCCAAGAATTTATATTGCTCTGTCAAGGAAGGAAAAGGAAGAT GATTTCTTCGCAATGAAAGGCACAAAACTGCCCCAAAGACCCAAAAAAAGGGCCAAGAACATTGATAAAGCACTTCAGTATTGTTTTCCAGGGATGTGGC TCTCTGACTTGACAAAGAGTAGGTACGAGGTTAGAGAGAAGAAATGTGTGAAGAAGCAAAAACGAAGAGGGTTGAAGGGGATGGAGAGCATGGACAGTGA TTCCGAGTAG
AA sequence Show only first row Show all	>Potri.001G073400.1 pacid=42790803 polypeptide=Potri.001G073400.1.p locus=Potri.001G073400 ID=Potri.001G073400.1.v4.1 annot-version=v4.1 MMRYQRVSPDCVPLSNGKKPNGVENGRSIPNGFSSTSTNFETKAFRFRSPSRNQDHHNNSTTSPPHSDNSHNHTQRHGTSPSPSPSRVGNGDVLLQWGQK KRARVSRSEIRAFPDESSSSGQARQPINKIPRRVDNKLSPSSMPPPPPPPSSQQQSTSTNTRGGNLKKENSGILSHRNLEKRSGAGNGSPSRNSGGSGKV VSRSTAGKRSPPTPENIDRKMPSSRSAAKDEKPNGSIVVADHQTRQVDSTRAQSEKEAGATNSNPASVPVVASGGEKVNNNEVIEWPRIYIALSRKEKED DFFAMKGTKLPQRPKKRAKNIDKALQYCFPGMWLSDLTKSRYEVREKKCVKKQKRRGLKGMESMDSDSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20300			Protein of unknown function (D...		Potri.001G073400 [exp]	0	1
AT1G70750			Protein of unknown function, D...		Potri.008G132200 [exp]	6.48	0.8111
AT2G46180		GC4	golgin candidate 4 (.1)		Potri.014G091300 [exp]	7.00	0.8674
AT5G11850			Protein kinase superfamily pro...		Potri.006G229400 [exp]	10.00	0.7938
AT3G51580			unknown protein		Potri.006G108400 [exp]	10.09	0.8658
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Potri.001G115600 [exp]	17.66	0.8362	Pt-ACR7.1
AT3G14450		CID9	CTC-interacting domain 9 (.1)		Potri.001G377500 [exp]	18.13	0.8288
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Potri.001G421200 [exp]	18.41	0.8648
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G472800 [exp]	20.97	0.8232	WRKY2.2
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.002G019400 [exp]	21.90	0.8287
AT5G16300			Vps51/Vps67 family (components...		Potri.008G079700 [exp]	27.03	0.8154

Compare expression of checked genes

Potri.001G073400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.