Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20280 219 / 2e-72 TAF11 TBP-associated factor 11 (.1) AT1G20000 173 / 2e-54 TAF11b TBP-associated factor 11B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G157450 [exp] 90 / 2e-23 AT4G20280 87 / 4e-23 TBP-associated factor 11 (.1) Potri.003G157401 [exp] 0 / 1 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036241 [exp] 216 / 3e-70 AT4G20280 188 / 1e-59 TBP-associated factor 11 (.1) Lus10038380 [exp] 180 / 5e-57 AT4G20280 145 / 1e-43 TBP-associated factor 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [poplar] [flax] Histone PF04719 [poplar] [flax] TAFII28 hTAFII28-like protein conserved region
Representative CDS sequence Show only first row Show all	>Potri.001G073500.1 pacid=42793745 polypeptide=Potri.001G073500.1.p locus=Potri.001G073500 ID=Potri.001G073500.1.v4.1 annot-version=v4.1 ATGAAGCAATCGAAGGATCCATTCGAGGCAGCGTATGTGGAGCAAGAAGAATCGCCACCAGAATCCCCAGTTGCCCAAGATGATTATGACACTCAAGCTT CTAACGCTGCTGCTGCTGCTGATGATTCTCAGGGTGCTGTCGTTGGTCAAGATGATGATGACCTTGGCGGTGGAGGCCGCAATGATTTTGCCCATTCCTC TGACCACCCATCTGCTTCGAGGCCTATGTTGGGCTCTGCAAGAAGTAAGGCAAAGAATAAAGACGATGATGAAGAGGAGGAGGAAGATAACATGGATGTT GAGCTTTCGAAGTTGGCTTCTACTGCTGACCCTGATAAAATGGCAAAGATGCAGACTATTTTAGCTCAGTTTACTGAAGGACAGATGAGTAGGTACGAAT CATTCCGCAGATCTGCACTGCAGAAGACTAACATGAAAAGGTTGTTAGTGAGCATCACTGGATCCCAGAAAATTTCTTTACCAATGACGATTGTAGTTTG CGGTATAGCAAAAATGTTTGTTGGTGAACTTGTTGAAACAGCCAGAATTGTAATGACGGAGAGGAAGGAATCTGGGCCTATCAGGCCTTGCCACATAAGA GAAGCATATAGAAGACTAAAGCTTGAAGGCAAAGTACCGAAGAGATCAGTACCAAGGCTCTTTCGGTAA
AA sequence Show only first row Show all	>Potri.001G073500.1 pacid=42793745 polypeptide=Potri.001G073500.1.p locus=Potri.001G073500 ID=Potri.001G073500.1.v4.1 annot-version=v4.1 MKQSKDPFEAAYVEQEESPPESPVAQDDYDTQASNAAAAADDSQGAVVGQDDDDLGGGGRNDFAHSSDHPSASRPMLGSARSKAKNKDDDEEEEEDNMDV ELSKLASTADPDKMAKMQTILAQFTEGQMSRYESFRRSALQKTNMKRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARIVMTERKESGPIRPCHIR EAYRRLKLEGKVPKRSVPRLFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Potri.001G073500 [exp]	0	1
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.011G063300 [exp]	15.00	0.7828
AT5G18540			unknown protein		Potri.008G216700 [exp]	16.30	0.8272
AT1G18680			HNH endonuclease domain-contai...		Potri.012G067700 [exp]	16.91	0.7746
AT5G61540			N-terminal nucleophile aminohy...		Potri.014G191900 [exp]	20.54	0.8261
AT4G16710			glycosyltransferase family pro...		Potri.013G025600 [exp]	23.87	0.8176
AT3G05100			S-adenosyl-L-methionine-depend...		Potri.005G046300 [exp]	29.73	0.7499
AT5G58005			Cytochrome c oxidase, subunit ...		Potri.018G109400 [exp]	31.54	0.8026
AT4G17430			O-fucosyltransferase family pr...		Potri.003G079400 [exp]	31.81	0.7513
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Potri.008G204000 [exp]	34.40	0.8052	Pt-ECR1.1
AT1G05720			selenoprotein family protein (...		Potri.019G112100 [exp]	39.26	0.8017

Compare expression of checked genes

Potri.001G073500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.