Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20270 1280 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 1098 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 1076 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 923 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 697 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 644 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 607 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 590 / 0 HSL1 HAESA-like 1 (.1) AT3G24240 589 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 585 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G157300 [exp] 1738 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 1104 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.007G009200 [exp] 1088 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.005G241500 [exp] 905 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 899 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 678 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.002G256500 [exp] 670 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G126100 [exp] 669 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 655 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036242 [exp] 1392 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10037358 [exp] 1078 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 1076 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 1063 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 985 / 0 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10013562 [exp] 898 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 895 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10035783 [exp] 871 / 0 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10038382 [exp] 840 / 0 AT4G20270 734 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10027221 [exp] 676 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G073600.1 pacid=42788573 polypeptide=Potri.001G073600.1.p locus=Potri.001G073600 ID=Potri.001G073600.1.v4.1 annot-version=v4.1 ATGGCTGCTTCTAACACGAGGCTTGCCGTCTTCTCTTCTCTACTTCTTTTGTTTCTGATCAACTCCTGTCAATCACTTTCCTCGCATAATACCTACCTCA AAAGACAAGCTTCAATCCTGGTTTCTCTTAAACAATCTCTTGAGTCATATGATCCTTCACTTGATAGTTGGAATGTGCCAAACTACCAACTTCTGTGCTC TTGGACTGGCATCCAATGCGACGACATGAACAGGTCAGTGGTTGCTCTTGATATATCCAATTCAAACATCTCGGGCACTCTCTCACCCGCGATCACTGAG CTTCGAAGCCTTGTCAATCTTTCGATCCAAGGAAACAGCTTCTCTGATGAGTTCCCACGAGAAATTCACAAGCTTATAAGGCTTCAGTTCCTCAACATAT CCAACAATCTGTTCAGTGGAGAGCTTGCTTGGGAGTTTTCTCAGTTGAAGGAACTTCAAGTGCTGGATGTTTATAACAACAATTTCAATGGCACACTACC ATTAGGTGTCACTCAACTCGCCAAGCTGAAGTACTTGGATTTTGGCGGGAATTACTTTCAGGGGACTATCCCTCCAAGCTATGGAAGTATGCAACAGCTG AATTATCTGTCACTTAAGGGAAATGATTTGCGTGGTTTAATACCTGGTGAGCTTGGTAATCTTACAAGTCTTGAGCAGCTCTACCTGGGGTATTACAATG AGTTTGATGGAGGAATCCCACCTGAGTTCGGTAAGCTGATCAATCTGGTTCATATAGACCTTGCAAACTGTAGCTTAAGTGGACCGATACCTCCAGAATT GGGCGGCCTCAGCAAGCTAGACACCCTCTTCTTGCAAACGAATGAGCTCACTGGTCCTATCCCTCCTGAACTGGGCAACCTGAGCAGCATCATATCTCTT GACCTCTCAAACAACGCCCTAACGGGAGATATTCCACTAGAGTTTTACGGGCTTCGTCGCCTCACCTTATTGAACTTATTCCTTAACAAGTTACATGGAG AGATCCCTTATTTCATTGCGGAGCTACCTGAGTTAGAAGTCCTGAAGCTTTGGCACAATAACTTCACAGGAGCCATTCCTGCAAAGCTGGGAGAAAATGG CAGATTAACTGAACTTGACCTGTCAAGCAATAAGCTTACCGGATTAGTCCCTAAATCTCTCTGCTTAGGAAGGAAGCTGCAGATACTAATTCTGCGCATC AACTTTCTGTTCGGTCCTCTGCCTGATGATCTTGGCCATTGTGACACTCTCTGGAGAGTTCGGTTGGGGCAGAACTATCTGACTGGATCAATCCCGAGTG GTTTCCTTTACTTGCCAGAACTGTCACTGATGGAGCTGCAGAACAATTATCTGAGTGGACAGGTTCCACAACAAATAAGCAAGACGCCATCTAAACTTGC GCAGATGAATCTTGCAGATAATCGCTTATCTGGGCCACTTCCTGCATCCATCGGAAATTTCTCCAACTTGCAAATTCTTCTGCTCAGCGGAAACCGATTC ACGGGGGAAATTCCATCTCAAATAGGTCAGTTGAACAATGTCTTTACATTGGATATGAGTAGGAACAACTTGTCTGGGAATATCCCCCCTGAAATTGGCG ATTGTCGTACCTTAACTTACTTGGATTTGAGTCAGAACCAACTCTCAGGCCCGATTCCAGTTCAGATCACACAAATCCACATATTAAATTACCTTAATAT ATCCTGGAACCATTTGAACCAAAGTCTTCCTAAGGAAATTGGGTCCATGAAAAGTCTAACCTCGGCAGACTTTTCTCACAACAACTTCTCTGGTTCCATA CCTGAATTTGGACAATATTCATTCTTCAACTCCACATCATTTTCCGGTAACCCTCAACTCTGTGGCTCCTACTTGAACCCTTGCAACTATTCATCTACGT CTCCATTACAATTCCACGACCAAAATAGCTCCACGTCTCAGGTCCCTGGAAAATTCAAGCTACTTTTTGCTCTTGGACTTCTAGGATGCTCTTTGGTATT TGCTGTTTTGGCAATCATCAAAACCCGAAAGATACGAAGAAATTCGAATTCCTGGAAGCTCACAGCATTCCAGAAGCTGGAATTTGGATGCGAAAACATA TTGGAATGCGTCAAGGAAAACAACATCATAGGGAGAGGTGGAGCTGGCATAGTCTACAGAGGTTTAATGCCAAATGGAGAACCAGTAGCAGTCAAGAAGT TGTTGGGAATAAGCAGAGGATCGTCTCATGATAATGGCCTATCTGCAGAAGTACAAACATTAGGCCAAATTCGACACAGGAATATAGTGAGGTTGTTGGC ATTTTGTTCGAATAAAGAGACCAATTTACTTGTATACGAGTACATGCCAAATGGAAGCCTAGGTGAAGTTCTGCATGGGAAGAGAGGTGGTTTTCTCAAG TGGGATACCAGGCTGAAAATTGCTATTGAAGCAGCGAAAGGCCTTTGTTACTTGCACCACGACTGTTCTCCTCTAATTATCCACCGGGACGTCAAGTCCA ATAACATTCTACTCAGCTCAGATTTTGAGGCTCATGTAGCAGATTTTGGGCTTGCCAAGTTCTTGCAAGACACCGGAGCTTCAGAATGCATGTCTGCAAT TGCTGGCTCTTATGGCTATATTGCTCCAGAATATGCATACACATTGAAGGTGGATGAGAAGAGTGATGTCTACAGCTTTGGAGTGGTACTGTTAGAGTTA ATCACAGGCAGAAGGCCAGTTGGGGATTTCGGAGAAGAAGGGCTAGACATTGTTCAATGGACTAAGACACAGACTAAATCAAGCAAAGAAGGGGTGGTAA AGATTCTGGATCAAGGGCTGACAGATATTCCATTAATTGAAGCAATGCAAGTCTTTTTTGTGGCGATGTTATGTGTTCAAGAACAAAGTGTGGAGAGACC AACAATGAGAGAAGTTGTTCAAATGCTTGCAGAAGCTAAACAACCCAACACATATCACAAGCAGTGA
AA sequence Show only first row Show all	>Potri.001G073600.1 pacid=42788573 polypeptide=Potri.001G073600.1.p locus=Potri.001G073600 ID=Potri.001G073600.1.v4.1 annot-version=v4.1 MAASNTRLAVFSSLLLLFLINSCQSLSSHNTYLKRQASILVSLKQSLESYDPSLDSWNVPNYQLLCSWTGIQCDDMNRSVVALDISNSNISGTLSPAITE LRSLVNLSIQGNSFSDEFPREIHKLIRLQFLNISNNLFSGELAWEFSQLKELQVLDVYNNNFNGTLPLGVTQLAKLKYLDFGGNYFQGTIPPSYGSMQQL NYLSLKGNDLRGLIPGELGNLTSLEQLYLGYYNEFDGGIPPEFGKLINLVHIDLANCSLSGPIPPELGGLSKLDTLFLQTNELTGPIPPELGNLSSIISL DLSNNALTGDIPLEFYGLRRLTLLNLFLNKLHGEIPYFIAELPELEVLKLWHNNFTGAIPAKLGENGRLTELDLSSNKLTGLVPKSLCLGRKLQILILRI NFLFGPLPDDLGHCDTLWRVRLGQNYLTGSIPSGFLYLPELSLMELQNNYLSGQVPQQISKTPSKLAQMNLADNRLSGPLPASIGNFSNLQILLLSGNRF TGEIPSQIGQLNNVFTLDMSRNNLSGNIPPEIGDCRTLTYLDLSQNQLSGPIPVQITQIHILNYLNISWNHLNQSLPKEIGSMKSLTSADFSHNNFSGSI PEFGQYSFFNSTSFSGNPQLCGSYLNPCNYSSTSPLQFHDQNSSTSQVPGKFKLLFALGLLGCSLVFAVLAIIKTRKIRRNSNSWKLTAFQKLEFGCENI LECVKENNIIGRGGAGIVYRGLMPNGEPVAVKKLLGISRGSSHDNGLSAEVQTLGQIRHRNIVRLLAFCSNKETNLLVYEYMPNGSLGEVLHGKRGGFLK WDTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLSSDFEAHVADFGLAKFLQDTGASECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLEL ITGRRPVGDFGEEGLDIVQWTKTQTKSSKEGVVKILDQGLTDIPLIEAMQVFFVAMLCVQEQSVERPTMREVVQMLAEAKQPNTYHKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.001G073600 [exp]	0	1
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	1.00	0.9633
AT3G52490			Double Clp-N motif-containing ...		Potri.010G241600 [exp]	2.44	0.9400
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.003G139200 [exp]	2.64	0.8957
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Potri.010G205400 [exp]	3.46	0.9253
AT3G52490			Double Clp-N motif-containing ...		Potri.008G017600 [exp]	4.24	0.9084
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.003G157300 [exp]	5.47	0.9191
AT1G69580	GARP		Homeodomain-like superfamily p...		Potri.010G167901 [exp]	7.54	0.8684
AT5G44170			S-adenosyl-L-methionine-depend...		Potri.001G148200 [exp]	8.94	0.8924
AT1G64700			unknown protein		Potri.011G153000 [exp]	9.21	0.8735
AT4G37250			Leucine-rich repeat protein ki...		Potri.005G142300 [exp]	10.39	0.8899

Compare expression of checked genes

Potri.001G073600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.