Plant FIBer expression Database

Potri.001G073700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G13440 352 / 3e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
AT5G64150 44 / 5e-05 RNA methyltransferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G157201
[exp]
187 / 2e-60 AT3G13440 155 / 3e-48 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008072
[exp]
341 / 7e-120 AT3G13440 310 / 1e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence
>Potri.001G073700.2 pacid=42791613 polypeptide=Potri.001G073700.2.p locus=Potri.001G073700 ID=Potri.001G073700.2.v4.1 annot-version=v4.1
ATGTCCCCAAAAACAGCACAAATCCGCCTTATGAGTTCGCATCCCGAGGTTTATGAACCGTGTGATGATTCCTTTGCGCTTGTCGATGCGCTTCTAGCTG
ATCGAACTAATATACTAGATCATTGTCCCAGATTATGTTTGGAAGTGGGTTGTGGTAGTGGTTATGTTATTGCTTCTCTAGCTCTTATGCTTGGACAGGA
GCTTCCTGGGGTGTACTACTTTGCCACTGATATTAATCCTCATGCACTGAGAGTGACGCGTGAGACGCTGGATGCTCATGCTGTTGATGCCGAGTTAATG
TGCATGGATATTGCATCTGGGCTTGAGAAGAGGTTGGCAGGAATGGTGGATGTGATGGTTGTGAACCCACCTTATGTTCCGACACCTGATTATGAGGTGG
GTCGTGAAGGAATTGCGTCAGCTTGGGCTGGAGGGGAGAATGGTAGGATTGTAATTGATAGGATATTGCCAGTAGCTGATAGACTTTTGTCGGATAAGGG
ATGGTTATACATGGTTACTCTTACAACAAATGATCCTTCACAGATATGTCTTCTGATGAGAAAGAAGGGGTATGCTTCTAGAATTGTTGTCCAGAGATCA
ACAGAAGAAGAGAGCCTTCACATCATCAAGTTTTGGCGTGATTCTGATATTCAATTGGATACAAAGGAGATCTTAACGACTAACAAATCGGTTCCTGCAA
GGGTCAAGGACTCACTCATCTCACAGTTTTCTCAATTGTCATTCTGTAGAGGTACCAACAGCAATTGTTTATGA
AA sequence
>Potri.001G073700.2 pacid=42791613 polypeptide=Potri.001G073700.2.p locus=Potri.001G073700 ID=Potri.001G073700.2.v4.1 annot-version=v4.1
MSPKTAQIRLMSSHPEVYEPCDDSFALVDALLADRTNILDHCPRLCLEVGCGSGYVIASLALMLGQELPGVYYFATDINPHALRVTRETLDAHAVDAELM
CMDIASGLEKRLAGMVDVMVVNPPYVPTPDYEVGREGIASAWAGGENGRIVIDRILPVADRLLSDKGWLYMVTLTTNDPSQICLLMRKKGYASRIVVQRS
TEEESLHIIKFWRDSDIQLDTKEILTTNKSVPARVKDSLISQFSQLSFCRGTNSNCL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G13440 S-adenosyl-L-methionine-depend... Potri.001G073700
[exp]
0 1
AT1G44760 Adenine nucleotide alpha hydro... Potri.002G084600
[exp]
2.23 0.9511
AT5G39590 TLD-domain containing nucleola... Potri.002G025032
[exp]
2.82 0.9500
AT1G20950 Phosphofructokinase family pro... Potri.010G106950
[exp]
3.46 0.9376
AT3G48480 Cysteine proteinases superfami... Potri.015G090800
[exp]
3.87 0.9277
AT5G05460 AtENGase85A Endo-beta-N-acetyglucosaminida... Potri.008G072901
[exp]
15.49 0.9090
AT1G13245 RTFL17, DVL4 DEVIL 4, ROTUNDIFOLIA like 17 ... Potri.010G129600
[exp]
20.34 0.9056
AT5G06900 CYP93D1 "cytochrome P450, family 93, s... Potri.016G049900
[exp]
20.90 0.8994
AT2G43490 Ypt/Rab-GAP domain of gyp1p su... Potri.017G023200
[exp]
20.97 0.8724
Potri.002G088800
[exp]
21.49 0.9115
AT3G20800 Cell differentiation, Rcd1-lik... Potri.011G086800
[exp]
21.79 0.9027

Potri.001G073700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.