Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44635 1312 / 0 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT2G16440 387 / 9e-122 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT4G02060 362 / 1e-113 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT1G44900 333 / 1e-100 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G07690 326 / 1e-99 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G46280 320 / 7e-97 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT3G09660 301 / 7e-90 MCM8 minichromosome maintenance 8 (.1) AT2G14050 250 / 1e-72 MCM9 minichromosome maintenance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121500 [exp] 376 / 1e-117 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.014G121000 [exp] 359 / 2e-112 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.018G112800 [exp] 331 / 9e-102 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G188700 [exp] 322 / 3e-98 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.004G131600 [exp] 322 / 9e-98 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.001G070500 [exp] 320 / 1e-95 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G131900 [exp] 317 / 2e-95 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.019G014403 [exp] 252 / 7e-73 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.003G157001 [exp] 0 / 1 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036244 [exp] 1389 / 0 AT5G44635 1262 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10038384 [exp] 1385 / 0 AT5G44635 1257 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10028795 [exp] 380 / 5e-119 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10017491 [exp] 369 / 4e-115 AT2G16440 1225 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10001452 [exp] 359 / 3e-112 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10002427 [exp] 357 / 2e-111 AT4G02060 1223 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10015267 [exp] 332 / 5e-98 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10025389 [exp] 316 / 4e-95 AT5G46280 1096 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10009052 [exp] 325 / 1e-94 AT1G44900 1263 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10023169 [exp] 314 / 2e-94 AT3G09660 1038 / 0.0 minichromosome maintenance 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00493 [poplar] [flax] MCM MCM P-loop domain CL0023 [poplar] [flax] PF14551 [poplar] [flax] MCM_N MCM N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G074000.3 pacid=42791840 polypeptide=Potri.001G074000.3.p locus=Potri.001G074000 ID=Potri.001G074000.3.v4.1 annot-version=v4.1 ATGGATGCATTCGGCCGCTACTTCGTCGACGAGAAAGCTGTCCGTGTTGAGAACATTTTCCTCGACTTCCTCAAAAGTTTTAGATTAGATGGACAAAATC GTAATATAGGAGAACCGTACTACGATGCTGAGATTGAAGCAATGAAAGCGAATGAATCAACAACGATGTTCATTGATTTCTCTCATGTCATGCTTTTTAA TGATGTTCTTCAAAAAGCCATTGCCGACGAGTACTTTAGGTTTGAGCCGTATTTGAAGAATGCGTGTAAGAGGTTTGTGATGGAGCTGAGCTCAACGTTT ATATCTGATGATAATCCTAACAAGGACATCAATGTTGCTTTCTTTAATATCCCTTTTTCCATGAGATTGAGAGAGCTAACAACAGCGGAAATTGGGAAAC TTGTGTCAGTAACCGGAGTGGTGACTCGCACAAGTGAGGTAAGGCCGGAGCTTTTGCAAGGAACTTTTAGGTGTTTGGAATGTGGTGGTGTTGTCAAGAA TGTTGAACAGCAATTCAAATATACTGAGCCAACAATTTGTGCCAATGCGACATGTTCCAATAAAATGAGATGGGCATTGCTTAGGCAAGAGAGCAAATTT GCTGACTGGCAGAGGGTGAGAATGCAGGAAACCTCTAAAGAGATTCCTGCCGGTTCCCTTCCCAGATCCTTGGATGTTATTGTTCGCCATGATATTGTTG AAAAGGCCAGAGCTGGTGACACGGTCATTTTCACAGGCACTGTGGTTGTTGTACCTGATATATTGGCATTGGCATCCCCTGGAGAGAGAGCAGAATGCCG GCGGGAATCTTCTCAGCTTAAAAATTCTGCTGTTGGTGGTGAAGGTGTCAGAGGGCTCCGAGCATTGGGAGTGAGAGACCTCTCTTATCGCCTTGCATTT ATAGCCAATTCAGTGCAGGTTTGTGATGGCAGAAGGGATACTGACATCAGGAATAGAAAAAAGGCTGTTGATGAAGATGATAACCAGGAATTCACGACAG AGGAGCTAGATGAAATCCAAAGAATGAGAAACACTCCTGATTTCTTCAATAAGATTGTTGATAGCATTGCTCCAACTGTTTTTGGTCACCAAGATATCAA ACGTGCAATCCTGCTCATGCTCTTGGGTGGCGTTCACAAGTTCACTCATGAGGGTATTAACCTTAGGGGGGACATCAATGTTTGTATTGTTGGTGATCCC AGCTGTGCAAAGTCTCAGTTCCTCAAGTATGCTTCAGGTATAGTTCCAAGATCTGTCTACACATCTGGAAAATCATCATCTGCTGCTGGGCTGACAGCAT CTGTGGCCAAAGAACCAGAAACTGGGGAATTTTGTATTGAGGCTGGTGCATTGATGCTTGCTGACAATGGCATTTGTTGCATTGATGAATTCGACAAGAT GGATATTAGAGATCAGGTTGCAATTCATGAGGCCATGGAACAGCAGACAATAAGCATCACAAAAGCTGGGATACAAGCGACACTCAATGCTCGAACATCA ATTCTAGCTGCAGCTAACCCCGCTGGAGGACGCTATGATAAATCTAAACCGCTCAAGTATAATGTGGCTCTCCCTCCTGCAATTCTTTCAAGGTTTGATC TGGTATATGTGATGATTGATGATCCAGATGATCAAACTGATTACCACATTGCGCACCACATCGTAAGAGTTCATCAAAAGCGTGAAGAAGCTCTTTCTCC TGCATTCACAACTGCTCAGATAAAACGATACATTACATATGCGAAAACCTTGAAACCAAAGCTTAATTCCGAAGCAAGAAAACTGTTGGTGGACTCTTAT GTTGCTCTTCGCAAAGGTGATACAACTCCAGGGAGTAGAGTTGCTTATCGAATGACTGTTAGACAGCTGGAGGCACTGATCAGACTGTCTGAGGCCATTG CTCGAAGTCATTTGGAAACTCAGGTACAACCACGACATGTTCGTGTAGCAGTCAAATTGCTGAAAACATCCATAATCAGTGTGGAGTCAAGCGAGATTGA TCTATCTGAGTTTCAAGAAGCATATGGTGATGGTGGTGATGGTGGAAATGATGGTCCCAGTCAAGGTGATGCCCAGCCAAGCAATGCTGACGCTAACCCA GTTTCAGAAAACACAGAAAATGGAGCGGCTTCTGCTAGCCGACAGGGGAAAAAACTTGTAATAAGTGAAGAATACTTTCAGAGGGTTACACAAGCACTGG TCATGCGCCTTAGACAGCATGAAGAAGCTGTGATGCGAGATGGGACGGGGCTGGCTGGAATGAGGCAGGGAGAGTTGATAAGATGGTATGTGGATCAACA AAATCAGAAAAATAGCTACAGTTCCTTGGAGGAAGCAAAGAATGAAGCTTCCAAAATCAAAGCCATTATAGAGAGTTTGATTCGGAGAGAAGGCTTTTTG ATTGTGGTAGATGATGGCAGCCGACCAGAAGCAGAGGGTGATGGTGCTAGGCAGTCATCATCAAGAGATGACAGGATATTGGTTGTGGCTCCTAATTATT TGGTAGAATGA
AA sequence Show only first row Show all	>Potri.001G074000.3 pacid=42791840 polypeptide=Potri.001G074000.3.p locus=Potri.001G074000 ID=Potri.001G074000.3.v4.1 annot-version=v4.1 MDAFGRYFVDEKAVRVENIFLDFLKSFRLDGQNRNIGEPYYDAEIEAMKANESTTMFIDFSHVMLFNDVLQKAIADEYFRFEPYLKNACKRFVMELSSTF ISDDNPNKDINVAFFNIPFSMRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFRCLECGGVVKNVEQQFKYTEPTICANATCSNKMRWALLRQESKF ADWQRVRMQETSKEIPAGSLPRSLDVIVRHDIVEKARAGDTVIFTGTVVVVPDILALASPGERAECRRESSQLKNSAVGGEGVRGLRALGVRDLSYRLAF IANSVQVCDGRRDTDIRNRKKAVDEDDNQEFTTEELDEIQRMRNTPDFFNKIVDSIAPTVFGHQDIKRAILLMLLGGVHKFTHEGINLRGDINVCIVGDP SCAKSQFLKYASGIVPRSVYTSGKSSSAAGLTASVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTS ILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREEALSPAFTTAQIKRYITYAKTLKPKLNSEARKLLVDSY VALRKGDTTPGSRVAYRMTVRQLEALIRLSEAIARSHLETQVQPRHVRVAVKLLKTSIISVESSEIDLSEFQEAYGDGGDGGNDGPSQGDAQPSNADANP VSENTENGAASASRQGKKLVISEEYFQRVTQALVMRLRQHEEAVMRDGTGLAGMRQGELIRWYVDQQNQKNSYSSLEEAKNEASKIKAIIESLIRREGFL IVVDDGSRPEAEGDGARQSSSRDDRILVVAPNYLVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Potri.001G074000 [exp]	0	1
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Potri.004G131600 [exp]	1.00	0.9772
AT3G42660			transducin family protein / WD...		Potri.012G065200 [exp]	1.73	0.9727
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Potri.009G121500 [exp]	2.00	0.9741
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Potri.001G070500 [exp]	2.82	0.9720
AT5G46740		UBP21	ubiquitin-specific protease 21...		Potri.001G142000 [exp]	3.16	0.9571	Pt-UBP21.2
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Potri.003G104700 [exp]	3.74	0.9381
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.014G021100 [exp]	5.47	0.9402	CYCA3.2
AT2G37960			unknown protein		Potri.006G094600 [exp]	6.32	0.9359
AT3G23740			unknown protein		Potri.002G236300 [exp]	7.74	0.9210
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G055900 [exp]	8.12	0.9236

Compare expression of checked genes

Potri.001G074000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.