Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30840 304 / 2e-101 ATPUP4 purine permease 4 (.1.2) AT1G28220 108 / 1e-26 ATPUP3 purine permease 3 (.1) AT2G33750 92 / 7e-21 ATPUP2 purine permease 2 (.1.2) AT1G28230 90 / 7e-20 ATPUP1, PUP1 purine permease 1 (.1) AT1G44750 85 / 2e-18 ATPUP11 purine permease 11 (.1.2.3) AT4G08700 82 / 5e-17 ATPUP13 Drug/metabolite transporter superfamily protein (.1) AT4G18210 67 / 6e-12 ATPUP10 purine permease 10 (.1) AT4G18220 66 / 8e-12 Drug/metabolite transporter superfamily protein (.1) AT5G41160 65 / 2e-11 ATPUP12 ARABIDOPSIS THALIANA PURINE PERMEASE 12, purine permease 12 (.1) AT4G18190 59 / 1e-09 ATPUP6 purine permease 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156900 [exp] 470 / 3e-166 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.014G043900 [exp] 110 / 4e-27 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.005G160300 [exp] 100 / 2e-23 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.002G099600 [exp] 89 / 1e-19 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.001G147600 [exp] 78 / 9e-16 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.001G352100 [exp] 76 / 5e-15 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G352200 [exp] 61 / 3e-10 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.006G184900 [exp] 57 / 5e-09 AT2G24220 404 / 6e-141 purine permease 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008073 [exp] 300 / 5e-98 AT1G30840 384 / 2e-130 purine permease 4 (.1.2) Lus10002868 [exp] 296 / 5e-98 AT1G30840 388 / 7e-134 purine permease 4 (.1.2) Lus10010757 [exp] 111 / 2e-27 AT1G28220 350 / 8e-120 purine permease 3 (.1) Lus10015906 [exp] 108 / 8e-27 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10008714 [exp] 109 / 1e-26 AT1G28220 286 / 7e-95 purine permease 3 (.1) Lus10020939 [exp] 108 / 1e-26 AT1G28220 286 / 9e-95 purine permease 3 (.1) Lus10008713 [exp] 107 / 7e-26 AT1G28220 288 / 2e-95 purine permease 3 (.1) Lus10020950 [exp] 107 / 8e-26 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10041133 [exp] 105 / 1e-25 AT1G28220 392 / 1e-136 purine permease 3 (.1) Lus10035636 [exp] 105 / 3e-25 AT1G28220 346 / 3e-118 purine permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF16913 [poplar] [flax] PUNUT Purine nucleobase transmembrane transport
Representative CDS sequence Show only first row Show all	>Potri.001G074100.2 pacid=42789708 polypeptide=Potri.001G074100.2.p locus=Potri.001G074100 ID=Potri.001G074100.2.v4.1 annot-version=v4.1 ATGAGCAATAATTCAGTTAGAGTGCAAGAAGACCAGAAGGCCAAGACGAACAAGAGATACATGTTTCTTTTGGTGATCAACTACCTGTTCCTCTTTGCGG GCTCACTCTCTTCGAGCTTACTCTCAAAGTTTTATTTCAACCATCACGGTTCAAGCAGATGGGTATCTACATGGGTACAATCTGCTGGTTTCCCTCTCCT TATCTTCCCCATTTACCTCCCTTTTTATGTCCTCAAATGCACTGATAGACGTCCCTTTAGTCACTTCACTCCAAGGATATTAATCTTATCAATCTTAATA GGTCTTATGTTAGGCCTGAATAACCTTCTCTTTTCATGGGGCAATTCTTATCTCCCAGTATCAACCTCATCTCTACTTTTGTCTTCTCAACTTGTATTCA ACCTTATTCTCTCGGTTATCATAGTAAAACAAAAGATCACCTTTCAAAATCTCAACTGTGTAGTCCTTTTGACCCTAAGTTCAGTCCTTTTGGCTTTAGG TTCAACCCATGATAAACCTCAAGGACTAACCCGTGCAAAATACTTCGTTGGTTTCTTTTCAACCATAGGAGCTGGCTTGTTATTTGCTTTATATTTACCA GTCATGGAAAAGATATACAAATGGATCTACTGTTATGAGATGGTGATGGAAATGCAGTTAGTGATGGAGATTGCAGCCACAGCTCTGGCCACCGCGGGGA TGGCATCAGACGGTGGTTTTTCAGAGATGAAGAGAGAGAGCCAAGTCAAATTTGATAAAGGACCAGAGATTTACTGGGTGACGGTGTTCGCTAACGTGGT TACATGGCAGCTATGCTTCATGGGCACAGCAGGAATGGTTTTCTTAACATCATCACTAACAGGAGGGATTTGCATGACTGCCCTTTTGGCCATGAACGTG TTAGGAGGGGTGCTGGTCTATGGAGATGAGTTTGGTGGTGTCAAGGTAGTATCCACTGTGCTTTGTGGGTGGGGTTTTTGTTCTTATGTTTATGGTATGT ATCTTAAAATGAGAGAAGAAAAGGAGAAGGAGAATAAAAATCATGGGATGGAGATGGCTCAGAACGTTGTATCAGCCAACAATGTTTAG
AA sequence Show only first row Show all	>Potri.001G074100.2 pacid=42789708 polypeptide=Potri.001G074100.2.p locus=Potri.001G074100 ID=Potri.001G074100.2.v4.1 annot-version=v4.1 MSNNSVRVQEDQKAKTNKRYMFLLVINYLFLFAGSLSSSLLSKFYFNHHGSSRWVSTWVQSAGFPLLIFPIYLPFYVLKCTDRRPFSHFTPRILILSILI GLMLGLNNLLFSWGNSYLPVSTSSLLLSSQLVFNLILSVIIVKQKITFQNLNCVVLLTLSSVLLALGSTHDKPQGLTRAKYFVGFFSTIGAGLLFALYLP VMEKIYKWIYCYEMVMEMQLVMEIAATALATAGMASDGGFSEMKRESQVKFDKGPEIYWVTVFANVVTWQLCFMGTAGMVFLTSSLTGGICMTALLAMNV LGGVLVYGDEFGGVKVVSTVLCGWGFCSYVYGMYLKMREEKEKENKNHGMEMAQNVVSANNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.001G074100 [exp]	0	1
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.010G080400 [exp]	2.00	0.8120
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Potri.009G030000 [exp]	5.29	0.7176
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.016G068200 [exp]	5.65	0.8075
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.007G085700 [exp]	8.48	0.7899	Pt-STGA1.4
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.018G064700 [exp]	8.71	0.7840
AT1G22540			Major facilitator superfamily ...		Potri.019G079700 [exp]	13.07	0.7386
AT1G72830	CCAAT	NF-YA3, ATHAP2C...	"nuclear factor Y, subunit A3"...		Potri.006G145100 [exp]	26.94	0.7707	HAP2.6
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.010G205100 [exp]	28.00	0.6968
					Potri.005G135700 [exp]	31.30	0.7344
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Potri.013G046500 [exp]	32.86	0.6990

Compare expression of checked genes

Potri.001G074100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.