Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44650 266 / 3e-89 Y3IP1, AtCEST Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G079401 [exp] 45 / 7e-07 AT5G44650 43 / 4e-07 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024729 [exp] 258 / 3e-85 AT5G44650 217 / 3e-69 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Lus10036245 [exp] 221 / 3e-72 AT5G44650 169 / 4e-52 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Lus10008075 [exp] 225 / 6e-70 AT5G44650 209 / 2e-63 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Lus10038385 [exp] 208 / 4e-67 AT5G44650 163 / 2e-49 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G074200.2 pacid=42788144 polypeptide=Potri.001G074200.2.p locus=Potri.001G074200 ID=Potri.001G074200.2.v4.1 annot-version=v4.1 ATGATGTTAACAATGGCTTTGCAACTTTACCAAATGCCCCTTACACGCTCATTATCTTCTTCTTCTTCTTCTTCACATTCCCATTCACTCTTCTTTCAAT CCCACCAATACACACCTTCTTTGAATGAGCGACTGACAACAAGATTGGCTAGTATTTTTCTCTACCATAACGCTTTGAGAAGGAGAAAGACTGGTAATTT GTTGGTTGGTAAAGAAGACATAGAATTGAGTGTCCAAGATCAAGAAGAAGACCAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGCACTACCCCCTAGCCCT CAAGACCTCCAATATGTTCAAGATATCAAAAGGGTGTTGGAGCTTCTAAGGAAAAACAGAGACATGATATTTAGTGAGGTTAAGTTGACAGTAATGATTG AGGACCCAAGAGAAGTTGAGAGAAGGAGACTGCTTGGTATTGATGATGCTGATACCCCAACCAGAGAGGACTTGGCTGAAGCTCTAGAACAAGTGAATGA AGGCAAAATCCCAAAAAAACGGGAGGCACTTCAAATGCTAGCTGAGGAGATGATAAATTGGCCTAATTTGGAGGTTGAAGCAACAAAGACAAAGCCAAGC AAATCCCTTTATGCAAAAGCCACTGACACTGGCATAAATCTTAAAGAGGCTGCAAGGAGACTGAAAATTGATTGGGACTCAGCTGCTGAAATTGAGGATG CTGATATGAATGATGAAACTGACGTACCCCCAGTTGTGGGTTATGGAGCGCTATACTTGGTCACAGGTTTTCCAATCATCATTGGTGTTGCAGTAGTATT AATCTTATTTTATAATTCTCTCCAGTAG
AA sequence Show only first row Show all	>Potri.001G074200.2 pacid=42788144 polypeptide=Potri.001G074200.2.p locus=Potri.001G074200 ID=Potri.001G074200.2.v4.1 annot-version=v4.1 MMLTMALQLYQMPLTRSLSSSSSSSHSHSLFFQSHQYTPSLNERLTTRLASIFLYHNALRRRKTGNLLVGKEDIELSVQDQEEDQEEEEEEEEEALPPSP QDLQYVQDIKRVLELLRKNRDMIFSEVKLTVMIEDPREVERRRLLGIDDADTPTREDLAEALEQVNEGKIPKKREALQMLAEEMINWPNLEVEATKTKPS KSLYAKATDTGINLKEAARRLKIDWDSAAEIEDADMNDETDVPPVVGYGALYLVTGFPIIIGVAVVLILFYNSLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Potri.001G074200 [exp]	0	1
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Potri.005G055800 [exp]	1.00	0.9818
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Potri.005G038700 [exp]	2.44	0.9815
AT2G44870			unknown protein		Potri.004G030100 [exp]	3.87	0.9787
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007350 [exp]	8.48	0.9733
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.009G057100 [exp]	8.48	0.9760	Pt-RPL1.1
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Potri.010G082300 [exp]	9.16	0.9703	ATCLH1.2
AT1G49970		SVR2, NCLPP5, C...	SUPPRESSOR OF VARIEGATION 2, N...		Potri.009G089300 [exp]	9.48	0.9746	Pt-CLPR1.1
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.001G262400 [exp]	10.00	0.9766	RPL1.2
AT5G20140			SOUL heme-binding family prote...		Potri.018G073501 [exp]	10.72	0.9760
AT3G08010		ATAB2	RNA binding (.1)		Potri.009G059800 [exp]	11.31	0.9747

Compare expression of checked genes

Potri.001G074200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.