Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20190 135 / 3e-36 unknown protein AT1G30850 101 / 3e-24 RSH4 root hair specific 4 (.1) AT2G34910 96 / 4e-22 unknown protein AT5G44660 94 / 6e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156700 [exp] 516 / 0 AT4G20190 129 / 1e-33 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036246 [exp] 187 / 2e-56 AT4G20190 125 / 3e-33 unknown protein Lus10008075 [exp] 161 / 2e-44 AT5G44650 209 / 2e-63 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Lus10038386 [exp] 124 / 7e-33 AT4G20190 84 / 2e-18 unknown protein Lus10024729 [exp] 47 / 2e-05 AT5G44650 217 / 3e-69 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G074300.1 pacid=42789492 polypeptide=Potri.001G074300.1.p locus=Potri.001G074300 ID=Potri.001G074300.1.v4.1 annot-version=v4.1 ATGGTCCCAGCTTCAGATATTGTCCTTCCCACTTCAAATAATGGAACTCGCGAAACACTTGAAATCTCTGATGATCTGGACTTCTGTATGAGTACTGCTG AACATTTCCATGAGTTAAAATTCATTGCTATTGAAGAATCTAAAAAGTTGGTCAGAAAGGAGAGTATGCAAAAGGAAAAGCAGATTTCAGTGGATCCAAT ATCGTTGAGAGAATCATCAAGGAGAGAATCTAGCTTCAATTTCATGCTGCCGCTAGTTTCAACTACTCCAACTCCAGACCTGCTACCACCTGCACTGCCT TCAAAATCCCAGCTTATAACCTGCAGCCTCCCCAGCTCAGCCTGCTCATCTCCTTCGATCAGCTTCACCATGTTGAAGAAGAAATGGAAAAACGAAAGCC AAGCATCTCCCCGCCAAATTGACAAAATGGCCAGTCGACATTCTTCAGCACATGCTCCCCTCGCTGCTCAACAAGAAATTCACTTGCGAAGGAGCAAGTC TTGTGCAGAAGGAAGGACAGCTGCACCGGCTGATGGACTTGATCTTTGGTTCACCAGACCAAATGCTTGCAAATCCAATAACAGACCTCATGGACACTTC AAAACTGAGGCTAGCAAAGAAGATCTCATAACTGGTGAAAAGATGGATTCCATTGATGATGGATTTAAATGCGGTGTGCTATGCTTGTACCTCCCAGGCT TCGCAAAGGGAAAACCAGTGAGACCAAAAAAGGAAGAAGTAAAAGTAGATTTGGGAAATGTAATATCCAGGACAGTTTCTCTGGAAAAATTTGAATGTGG TTCATGGGCTTCATCGGCCATCATAAATGACCATGAAGATGACTCCATGAATCTTTACTTTGATTTGCCAATGGAGTTGATCCAAACTAATTCCAATGAT GCAACTTCACCGGTTGCTGCCGCCTTCGTCTTCGACAAGGATCGAAAAGGAGTTCTCAAAAGTTGTTCAACAAGAGCAGCACCCAGGAAATCCCATGAAT CTTTTCGCCACGTTCGGTTTTCAACATCATCTTCCACATCGCACCCTACCTCGCCAACTTCTTGCATTACACCTCGCTTGCAAAAGGCTAGGGAGGACTT CAATGCTTTCTTAGAAGCACAGGGTGCATGA
AA sequence Show only first row Show all	>Potri.001G074300.1 pacid=42789492 polypeptide=Potri.001G074300.1.p locus=Potri.001G074300 ID=Potri.001G074300.1.v4.1 annot-version=v4.1 MVPASDIVLPTSNNGTRETLEISDDLDFCMSTAEHFHELKFIAIEESKKLVRKESMQKEKQISVDPISLRESSRRESSFNFMLPLVSTTPTPDLLPPALP SKSQLITCSLPSSACSSPSISFTMLKKKWKNESQASPRQIDKMASRHSSAHAPLAAQQEIHLRRSKSCAEGRTAAPADGLDLWFTRPNACKSNNRPHGHF KTEASKEDLITGEKMDSIDDGFKCGVLCLYLPGFAKGKPVRPKKEEVKVDLGNVISRTVSLEKFECGSWASSAIINDHEDDSMNLYFDLPMELIQTNSND ATSPVAAAFVFDKDRKGVLKSCSTRAAPRKSHESFRHVRFSTSSSTSHPTSPTSCITPRLQKAREDFNAFLEAQGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20190			unknown protein		Potri.001G074300 [exp]	0	1
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.004G002400 [exp]	3.46	0.8635
					Potri.019G038142 [exp]	3.74	0.8815
AT1G10330			Tetratricopeptide repeat (TPR)...		Potri.018G003300 [exp]	12.96	0.8371
AT4G14305			Peroxisomal membrane 22 kDa (M...		Potri.004G009201 [exp]	14.14	0.8054
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.014G115300 [exp]	22.24	0.8155
AT1G67410			Exostosin family protein (.1)		Potri.010G227901 [exp]	24.26	0.8175
AT1G75280			NmrA-like negative transcripti...		Potri.005G228700 [exp]	25.88	0.8388	PCBER7
AT3G03550			RING/U-box superfamily protein...		Potri.019G043900 [exp]	28.24	0.8281
AT4G37860			SPT2 chromatin protein (.1)		Potri.001G257300 [exp]	29.32	0.8038
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.001G214800 [exp]	31.24	0.8417

Compare expression of checked genes

Potri.001G074300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.