Plant FIBer expression Database

Potri.001G074600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G44670 613 / 0 Domain of unknown function (DUF23) (.1)
AT4G20170 610 / 0 Domain of unknown function (DUF23) (.1)
AT2G33570 456 / 6e-157 Domain of unknown function (DUF23) (.1)
AT5G48190 150 / 8e-44 Domain of unknown function (DUF23) (.1)
AT3G60990 150 / 8e-44 Domain of unknown function (DUF23) (.1)
AT3G07380 147 / 8e-43 Domain of unknown function (DUF23) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G156600
[exp]
843 / 0 AT5G44670 598 / 0.0 Domain of unknown function (DUF23) (.1)
Potri.005G258900
[exp]
443 / 7e-152 AT2G33570 706 / 0.0 Domain of unknown function (DUF23) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008076
[exp]
745 / 0 AT5G44670 642 / 0.0 Domain of unknown function (DUF23) (.1)
Lus10036247
[exp]
729 / 0 AT5G44670 649 / 0.0 Domain of unknown function (DUF23) (.1)
Lus10038387
[exp]
726 / 0 AT5G44670 639 / 0.0 Domain of unknown function (DUF23) (.1)
Lus10024731
[exp]
563 / 0 AT5G44670 491 / 1e-170 Domain of unknown function (DUF23) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF01697 Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence
>Potri.001G074600.1 pacid=42793575 polypeptide=Potri.001G074600.1.p locus=Potri.001G074600 ID=Potri.001G074600.1.v4.1 annot-version=v4.1
ATGGGTAAAGAGAGATCAGAGAAAGAGAGAGGTGGAGGAGAGCATAACAAGAGGAATTTGTTTGTGTCTTGTGTTGTAATGAACTCATGTGCTGCCGAGC
TTAAACTTCTTTTAACAGCTCTTTTAGTTATTTGCAGTGTTGCTACCCTCTTCCAGATTCTCCCTCCACGTTTTACTATCTCTGCTTCTGATCTCCGTTT
TTGCATCTCTAGGATTTCCACCTCCAACACCTCCATCGCTTCCCTCAACAGTACCCCAACCAGTACCCCAACCATGCCTCCAAGCCCATCCCCGCCCTCC
ATTCGAAAAGATCAAGTGGCTGACAATGGTGTTATCAAGCGAGTCTTTAACCCTTATGGTTCAGCTGCTTATAATTTCATCACCATGGGTGCTTACAGAG
GTGGACTCAACACCTTTGCTATCATTGGCCTTGCTTCAAAACCTCTCCATGTTTACTCAAAACCCGCTTACCAATGTGAGTGGGTCCCCCAATCGTCCTC
TGCATCCAACTCTACTTTCTCCACTGTTTCTTACAAGATGCTCCCTGATTGGGGTTATGGTCATGTCTACACTGTTGTTGTAGTGAACTGTACCTTTTCA
GAGGCTGTTAATAGTGAAAATTCAGGCGGGAAGTTGTTCCTGGAAGCCTCAACATCAGGCGGTGGTGATAGAGATTTTAACATTACTGATAGATTTGAGG
TTTTAAATGAATCCCCAGGAGATATAAACACGACCCTTTTTAGTTCAAAGCCTAAATATGATTATTTGTATTGTGGGTCATCTTTATATGGTGGGCTGAG
TCCACAAAGAGTGAGGGAATGGATTGCTTATCATGTGAGATTATTTGGGAAAAGATCTCATTTTGTTATACATGATGCTGGTGGGGTTCATGAGGAGGTT
TTAGAGGTTTTGAAGCCATGGATGGAATTGGGGTATGTTACATTGCAAGATATAAAAGAACAAGAGAGGTTTGATGGGTATTACCATAATCAGTTTATGG
TTGTCAATGATTGTTTGCATAGGTATAAGTTTATGGCTAAGTGGATGTTCTTTTTTGATGTTGATGAGTATATTCATGTGCCACAAAAGAATACTATCAA
GTCTGTCTTGGATTCGCTCTCGGATTATACTCAGTTCACTATTGAGCAAATGCCTATGAATAACAAGCTCTGCCTCTCTGCTGATTATGGTAGATATTAC
AGAAAGTGGGGGTTTGAGAAACTTGTATACAAAGATGTGAAGAGAGGCATAAGGAGAGACCGAAAATACGCAATCCAACCACGCAATGTCTTTGCAACCG
GAGTGCACATGTCCCAGAACGTTGCCGGTAAAACAACACACAAAACTGAGGGCATGATCAGATATTTCCATTATCATGGAACCGCAGCACAGAGGCGTGA
GCCATGCCGGAACCTGCTCAATGTCACGGAAATCAACTTTGAAAACAATCCTTATGTCCTTGACACAACAATGCGAGATCTTGCTTGGTCTGTGAAGAAA
TTTGAGAACCAAATGATTGGACCCAAGCTAAAAAATACTCGGCAATGA
AA sequence
>Potri.001G074600.1 pacid=42793575 polypeptide=Potri.001G074600.1.p locus=Potri.001G074600 ID=Potri.001G074600.1.v4.1 annot-version=v4.1
MGKERSEKERGGGEHNKRNLFVSCVVMNSCAAELKLLLTALLVICSVATLFQILPPRFTISASDLRFCISRISTSNTSIASLNSTPTSTPTMPPSPSPPS
IRKDQVADNGVIKRVFNPYGSAAYNFITMGAYRGGLNTFAIIGLASKPLHVYSKPAYQCEWVPQSSSASNSTFSTVSYKMLPDWGYGHVYTVVVVNCTFS
EAVNSENSGGKLFLEASTSGGGDRDFNITDRFEVLNESPGDINTTLFSSKPKYDYLYCGSSLYGGLSPQRVREWIAYHVRLFGKRSHFVIHDAGGVHEEV
LEVLKPWMELGYVTLQDIKEQERFDGYYHNQFMVVNDCLHRYKFMAKWMFFFDVDEYIHVPQKNTIKSVLDSLSDYTQFTIEQMPMNNKLCLSADYGRYY
RKWGFEKLVYKDVKRGIRRDRKYAIQPRNVFATGVHMSQNVAGKTTHKTEGMIRYFHYHGTAAQRREPCRNLLNVTEINFENNPYVLDTTMRDLAWSVKK
FENQMIGPKLKNTRQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G44670 Domain of unknown function (DU... Potri.001G074600
[exp]
0 1
AT3G23730 XTH16 xyloglucan endotransglucosylas... Potri.014G146100
[exp]
5.09 0.7238 Pt-XTR7.1
AT3G23820 GAE6 UDP-D-glucuronate 4-epimerase ... Potri.001G320000
[exp]
5.91 0.6794 GAE6.1
AT5G62220 ATGT18 glycosyltransferase 18 (.1) Potri.012G130700
[exp]
7.14 0.6586
AT5G06700 TBR TRICHOME BIREFRINGENCE, Plant ... Potri.006G193900
[exp]
12.00 0.7376
AT3G06150 unknown protein Potri.008G202400
[exp]
12.32 0.6774
AT5G54400 S-adenosyl-L-methionine-depend... Potri.001G405200
[exp]
13.41 0.7197
AT1G20330 FRL1, CVP1, SMT... FRILL1, COTYLEDON VASCULAR PAT... Potri.002G016300
[exp]
18.76 0.6224 Pt-SMT1.1
AT4G25810 XTH23, XTR6 xyloglucan endotransglucosylas... Potri.006G071200
[exp]
24.49 0.6933 Pt-EXT.6
AT4G32410 AtCESA1, RSW1, ... RADIALLY SWOLLEN 1, cellulose ... Potri.018G029400
[exp]
33.91 0.6393 Pt-CESA1.2
AT5G60920 COB COBRA-like extracellular glyco... Potri.015G060000
[exp]
33.94 0.6692

Potri.001G074600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.