Plant FIBer expression Database

Potri.001G074901 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G20150 142 / 3e-46 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G156301
[exp]
155 / 2e-50 AT4G20150 135 / 2e-42 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036250
[exp]
144 / 8e-47 AT4G20150 135 / 2e-43 unknown protein
Lus10038391
[exp]
144 / 8e-47 AT4G20150 135 / 2e-43 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G074901.1 pacid=42787927 polypeptide=Potri.001G074901.1.p locus=Potri.001G074901 ID=Potri.001G074901.1.v4.1 annot-version=v4.1
ATGGTATTCAGTGCAACAGTGGTAGGAGCACTGTTGGGGCTGGGCACCCAGATGTACTCCAATGCTCTCCGCAAACTCCCTTACATGCGCCATCCGTGGG
AACATGTGGTGGGCATGGGATTAGGAGTTGTTTTTGTGAATCAATTGGTCAAATGGGATGCTCAGCTTGAACAAGACCTTGACAAGATGCTTCAGAAAGC
TAAGGAAGCCAATGAGCGCCGTTACTTCGATCAAGATGATGATTAG
AA sequence
>Potri.001G074901.1 pacid=42787927 polypeptide=Potri.001G074901.1.p locus=Potri.001G074901 ID=Potri.001G074901.1.v4.1 annot-version=v4.1
MVFSATVVGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGVVFVNQLVKWDAQLEQDLDKMLQKAKEANERRYFDQDDD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G20150 unknown protein Potri.001G074901
[exp]
0 1
AT5G54750 Transport protein particle (TR... Potri.001G418400
[exp]
2.44 0.9421
AT1G51650 ATP synthase epsilon chain, mi... Potri.010G250000
[exp]
2.64 0.9465
AT1G47420 SDH5 succinate dehydrogenase 5 (.1) Potri.014G032400
[exp]
3.46 0.9259
AT1G14450 NADH dehydrogenase (ubiquinone... Potri.004G229900
[exp]
6.32 0.9228
AT4G29735 unknown protein Potri.004G215200
[exp]
7.07 0.9063
AT2G42210 ATOEP16-3 Mitochondrial import inner mem... Potri.006G059300
[exp]
7.14 0.9268
AT5G42790 ARS5, ATPSM30, ... ARSENIC TOLERANCE 5, proteasom... Potri.005G229200
[exp]
7.48 0.9083
AT5G10745 unknown protein Potri.018G014101
[exp]
8.48 0.8810
AT5G45750 AtRABA1c RAB GTPase homolog A1C (.1) Potri.011G070300
[exp]
8.83 0.9008
AT1G51510 Y14 RNA-binding (RRM/RBD/RNP motif... Potri.009G051000
[exp]
10.09 0.8375

Potri.001G074901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.