Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20140 1370 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 1227 / 0 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 546 / 2e-174 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 526 / 1e-166 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 521 / 6e-165 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 485 / 2e-151 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G73080 460 / 6e-142 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT4G08850 457 / 2e-141 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT5G46330 458 / 1e-140 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 445 / 9e-138 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G156200 [exp] 1786 / 0 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G088900 [exp] 531 / 2e-170 AT4G20140 700 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G174900 [exp] 531 / 7e-169 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 491 / 4e-154 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G258400 [exp] 480 / 1e-148 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.005G198000 [exp] 476 / 1e-148 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.014G195100 [exp] 477 / 2e-147 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G063300 [exp] 470 / 5e-146 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G258000 [exp] 470 / 7e-145 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036251 [exp] 1243 / 0 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038392 [exp] 1142 / 0 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10027688 [exp] 538 / 9e-173 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10011756 [exp] 478 / 1e-148 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10000509 [exp] 457 / 2e-141 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10028612 [exp] 455 / 3e-140 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10017267 [exp] 451 / 5e-140 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 449 / 9e-139 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 452 / 1e-138 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10036242 [exp] 447 / 2e-138 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G075000.1 pacid=42788346 polypeptide=Potri.001G075000.1.p locus=Potri.001G075000 ID=Potri.001G075000.1.v4.1 annot-version=v4.1 ATGGGTGTGCCAAAACAAGTTTTGTTACTTTTTGTTGCCATTTTAGTGTGCTTTTCCTTTGGCTTTGTTTTGTGCCAAAACCAAGAGCTCTCTGTTCTTT TGGAGGTGAAGAAATCATTCGAGGGAGACCCAGAAAAAGTTTTGCATGACTGGAATGAAAGCAACCCAAATTCATGCACATGGACAGGAGTTACCTGTGG CTTGAACTCGGTTGATGGCTCAGTGCAAGTTGTGAGTCTAAACTTATCTGACTCATCACTTTCCGGCTCAATATCACCCTCACTCGGTAGTTTAAAGTAC CTGCTCCACCTTGATCTTTCTTCTAACAGCCTCACGGGTCCCATTCCAACTACTCTCTCAAATCTTTCTTCATTGGAAACTCTGCTTTTGTTCTCTAATC AACTCACTGGCCCCATCCCAATTCAACTCGGTTCAATCACGAGTCTCTTAGTAATGAGGATCGGTGATAATGGACTCAGTGGACCTGTTCCTGCCTCTTT CGGTAATCTTGTCAACTTAGTTACTCTTGGTTTGGCCTCATGCAGTCTCACAGGCCCAATACCTCCCCAACTCGGACAACTAAGCCAAGTCCAGAACTTG ATTTTACAGCAGAACCAACTTGAAGGACTGATTCCTGCCGAGCTAGGGAATTGTTCGAGCCTCACTGTCTTCACTGTAGCTCTCAACAATCTAAATGGAT CAATCCCTGGAGAATTGGGTCGTCTTCAAAATCTCCAAATACTAAACCTGGCAAACAATAGTCTCTCTGGAGAAATCCCGACTCAACTCGGGGAAATGAG TCAGCTCGTCTACCTGAATTTCATGGGAAACCATCTTGGAGGTTCAATCCCAAAGTCCCTAGCAAAAATGGGTAGTCTTCGGAATCTTGATTTATCAATG AACATGCTCACTGGAGGCGTTCCAGAGGAGTTGGGCAGAATGGCTCAGCTTGTTTTCTTGGTTTTATCAAATAACAATCTTTCCGGTGTGATACCAACAA GCCTATGTTCAAACAATACCAATTTGGAGAGCTTGATTCTGTCAGAGATTCAACTTTCTGGCCCCATTCCGAAAGAATTAAGGCTATGTCCATCTCTGAT GCAGCTTGACTTGTCCAACAACAGCCTTAATGGATCCATTCCTAATGAAATTTATGAGTCCGTTCAGTTGACTCATCTCTATCTCCACAACAACAGCTTG GTGGGTTCAATATCCCCTTTGATAGCAAACTTAAGCAATCTGAAGGAGCTTGCATTGTATCACAACAATTTGCTAGGCAATCTGCCTAAGGAGATTGGAA TGCTTGGAAATCTTGAAGTCTTGTATCTATACGACAATCTCTTATCTGGGGAGATTCCTATGGAGATTGGCAATTGTTCAAACTTGCAAATGATTGATTT CTATGGAAATCATTTCAGTGGAGAGATTCCTGTTACTATTGGGAGGCTGAAGGGACTGAATCTGCTTCATTTGAGACAAAATGAGCTTTTTGGTCATATT CCCGCCACTTTGGGTAACTGTCATCAACTAACTATTCTAGACTTGGCAGATAATGGCCTATCTGGTGGCATTCCAGTTACTTTTGGATTTCTTCATGCTC TTGAGCAACTCATGCTTTACAACAATTCCCTTGAAGGTAACCTTCCCGATTCGCTTACCAATTTACGAAATCTGACCAGAATCAATCTGTCTAAAAACAG AATCAATGGTAGCATCTCTGCATTATGTGGCTCGAGTTCTTTTCTTTCTTTTGATGTCACAAGCAATGCATTTGGGAATGAAATTCCTGCCCTGTTGGGA AATTCACCTTCTCTTGAAAGGCTTAGATTAGGGAACAACCGGTTTACTGGCAAAATCCCATGGACACTCGGTCAAATCCGAGAGTTGTCGTTGCTAGACC TGTCAGGGAATTTGCTCACTGGACAAATACCAGCACAGCTTATGTTGTGCAAGAAATTGGAACACGTTGATCTCAACAACAACCTTCTTTATGGGTCTGT TCCATCATGGCTTGGAAATTTGCCACAGTTAGGGGAGCTTAAGCTCTTCTCCAATCAATTTACAGGGTCTCTTCCTCGAGAGCTATTCAATTGTTCTAAA TTGTTGGTGCTTTCCCTTGATGCTAACTTTCTGAATGGAACTCTTCCTGTGGAGGTTGGTAATCTAGAATCTCTAAATGTACTCAATCTCAATCAAAACC AATTATCAGGATCGATCCCTCTGTCCCTGGGTAAGCTGAGCAAGCTGTATGAGCTTCGGCTCTCGAATAACAGTTTCAGCGGTGAAATACCTTCTGAACT TGGGCAACTCCAGAATCTCCAAAGCATTTTAGACCTCAGCTACAACAATCTCGGTGGTCAAATTCCACCTTCTATTGGTACATTGTCCAAACTTGAAGCT CTTGATCTGTCTCACAATTGCCTAGTTGGAGCTGTCCCTCCTGAAGTTGGTAGCTTGAGCAGTCTTGGCAAGCTTAATCTCTCGTTCAATAATCTCCAAG GCAAACTGGACAAGCAATTCTCACACTGGCCACCTGAAGCATTTGAAGGAAACCTGCAGCTCTGTGGAAACCCTCTTAATCGCTGCTCTATCTTAAGTGA TCAGCAGTCAGGCCTAAGTGAGTTATTAGTGGTGGTAATCTCAGCAACTACTTCCTTAGCTGCGATTGCTCTGCTCGCACTTGGACTTGCTCTCTTCTTC AAACGCAGGCGAGAATTCCTCAAAAGGGTGAGTGAAGGGAACTGCATTTGCTCTTCCAGTTCTTCCCAAGCTCAGCGCAAAACACCCTTTCTGAGGGGTA CTGCCAAGAGAGACTACAGGTGGGATGACCTTATGGAAGCGACAAACAATCTTAGTGATGAGTTCATCATTGGCTCGGGTGGATCTGGAACAATATACAG AGCTGAATTTCAAAGTGGAGAAACTGTAGCGGTGAAGAAGATTTTGTGGAAAGATGAGTTTCTACTTAATAAAAGCTTCGCAAGAGAAGTGAAGACACTT GGAAGGATTAGGCACAGGAATCTAGTGAAGCTGATAGGGTATTGTAGCAACAAAGGGGCGGGTTGTAATCTTTTGATTTATGAATACATGGAGAATGGGA GTTTGTGGGATTGGCTGCATCAACAACCAGTGAACAGCAAGCAGAGGCAAAGCCTGGACTGGGAGGCGAGATTAAAGATTGGTGTGGGATTAGCCCAGGG AGTGGAGTACCTTCACCATGATTGTGTACCAAAGATCATGCATAGAGATATCAAATCTAGCAATGTATTGCTTGATTCCAATATGGAGGCGCATTTAGGG GATTTTGGACTGGCAAAGGCACTCGAGGAGAATTATGACTCCAATACAGAGTCGCATTCATGGTTTGCGGGCTCTTACGGTTATATTGCTCCAGAGCATG CATACTCGTTCAAGGCAACAGAGAAGAGTGATGTTTATAGCATGGGTATTGTGCTGATGGAACTCGTTAGTGGAAAAACGCCAACTGATGCGACCTTTGG TGTCGATATGGACATGGTGAGATGGGTAGAAAAACATACGGAAATGCAAGGTGAAAGTGCTCGTGAGTTGATCGATCCTGCATTGAAACCACTCGTGCCG TACGAAGAATATGCAGCGTATCAAATGCTTGAAATTGCACTGCAGTGCACAAAAACCACCCCACAAGAGAGGCCCTCCTCCCGACATGCATGTGATCAAT TACTACATTTGTACAAGAATAGAATGGTGGATTTTGACATGAATATAGATCCTAATGCATAA
AA sequence Show only first row Show all	>Potri.001G075000.1 pacid=42788346 polypeptide=Potri.001G075000.1.p locus=Potri.001G075000 ID=Potri.001G075000.1.v4.1 annot-version=v4.1 MGVPKQVLLLFVAILVCFSFGFVLCQNQELSVLLEVKKSFEGDPEKVLHDWNESNPNSCTWTGVTCGLNSVDGSVQVVSLNLSDSSLSGSISPSLGSLKY LLHLDLSSNSLTGPIPTTLSNLSSLETLLLFSNQLTGPIPIQLGSITSLLVMRIGDNGLSGPVPASFGNLVNLVTLGLASCSLTGPIPPQLGQLSQVQNL ILQQNQLEGLIPAELGNCSSLTVFTVALNNLNGSIPGELGRLQNLQILNLANNSLSGEIPTQLGEMSQLVYLNFMGNHLGGSIPKSLAKMGSLRNLDLSM NMLTGGVPEELGRMAQLVFLVLSNNNLSGVIPTSLCSNNTNLESLILSEIQLSGPIPKELRLCPSLMQLDLSNNSLNGSIPNEIYESVQLTHLYLHNNSL VGSISPLIANLSNLKELALYHNNLLGNLPKEIGMLGNLEVLYLYDNLLSGEIPMEIGNCSNLQMIDFYGNHFSGEIPVTIGRLKGLNLLHLRQNELFGHI PATLGNCHQLTILDLADNGLSGGIPVTFGFLHALEQLMLYNNSLEGNLPDSLTNLRNLTRINLSKNRINGSISALCGSSSFLSFDVTSNAFGNEIPALLG NSPSLERLRLGNNRFTGKIPWTLGQIRELSLLDLSGNLLTGQIPAQLMLCKKLEHVDLNNNLLYGSVPSWLGNLPQLGELKLFSNQFTGSLPRELFNCSK LLVLSLDANFLNGTLPVEVGNLESLNVLNLNQNQLSGSIPLSLGKLSKLYELRLSNNSFSGEIPSELGQLQNLQSILDLSYNNLGGQIPPSIGTLSKLEA LDLSHNCLVGAVPPEVGSLSSLGKLNLSFNNLQGKLDKQFSHWPPEAFEGNLQLCGNPLNRCSILSDQQSGLSELLVVVISATTSLAAIALLALGLALFF KRRREFLKRVSEGNCICSSSSSQAQRKTPFLRGTAKRDYRWDDLMEATNNLSDEFIIGSGGSGTIYRAEFQSGETVAVKKILWKDEFLLNKSFAREVKTL GRIRHRNLVKLIGYCSNKGAGCNLLIYEYMENGSLWDWLHQQPVNSKQRQSLDWEARLKIGVGLAQGVEYLHHDCVPKIMHRDIKSSNVLLDSNMEAHLG DFGLAKALEENYDSNTESHSWFAGSYGYIAPEHAYSFKATEKSDVYSMGIVLMELVSGKTPTDATFGVDMDMVRWVEKHTEMQGESARELIDPALKPLVP YEEYAAYQMLEIALQCTKTTPQERPSSRHACDQLLHLYKNRMVDFDMNIDPNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Potri.001G075000 [exp]	0	1
AT1G30760			FAD-binding Berberine family p...		Potri.011G161300 [exp]	3.74	0.7799
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Potri.003G197466 [exp]	10.14	0.7982
AT5G47530			Auxin-responsive family protei...		Potri.014G161900 [exp]	12.96	0.7701
AT4G22030			F-box family protein with a do...		Potri.011G006900 [exp]	19.74	0.7540
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.009G061000 [exp]	21.42	0.7283
AT1G25500			Plasma-membrane choline transp...		Potri.008G118200 [exp]	25.41	0.7345
AT5G65290			LMBR1-like membrane protein (....		Potri.005G072100 [exp]	32.31	0.7126
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G076900 [exp]	33.94	0.7226
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.001G101100 [exp]	36.66	0.7369
AT5G51160			Ankyrin repeat family protein ...		Potri.015G111300 [exp]	37.58	0.7605

Compare expression of checked genes

Potri.001G075000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.