Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17370 436 / 8e-149 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 61 / 1e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 59 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 56 / 4e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 56 / 5e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18140 42 / 0.0007 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G155900 [exp] 291 / 4e-97 AT5G17370 157 / 6e-46 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 62 / 8e-10 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 62 / 9e-10 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 57 / 3e-08 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G140200 [exp] 42 / 0.0008 AT5G23730 427 / 3e-149 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2, EARLY FLOWERING BY OVEREXPRESSION 2, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001227 [exp] 387 / 2e-130 AT5G17370 301 / 8e-97 Transducin/WD40 repeat-like superfamily protein (.1) Lus10038394 [exp] 131 / 9e-35 AT5G17370 122 / 6e-32 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 61 / 1e-09 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 61 / 2e-09 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10018458 [exp] 59 / 6e-09 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 59 / 8e-09 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10037378 [exp] 42 / 0.0007 AT4G28450 733 / 0.0 nucleotide binding;protein binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G075300.1 pacid=42788744 polypeptide=Potri.001G075300.1.p locus=Potri.001G075300 ID=Potri.001G075300.1.v4.1 annot-version=v4.1 ATGCCACAAGAACTTCCGGGGTTTTATTATGATAAAGAGAAGAACAGGTATTTTCCTCTCAAAGGCCCAATTCCGGGTTCCTCTCGCTCTTCTTCTTCTT CAAACAAAGCTAAAAAACCATCTACAAACAATACCCAGGAATCCAACTTTTGTAGGAGAACTGGAGTAAGAATATCCCAACTGCTTCAGGGTAGGGAGTT GAATGGTAATGTAATAACTTCCAGCAAAGGGAAGTGTGACTTCGTGGAGGAATTCCTAAAGATACAAGCATCCAAACCAGTGGTTTGGAAGTACCGGTCA ACTGAAAAGATAGCCGATAGTGCCATGGACCAAATACATATTGATATTCACACAGCAGAAGGTCAAACTGAAGCAAATGTTCTAATAACAGGCGGTGTAA ATGGCTCTCTGAGTCTTTTTGAAGTAGGAAAAGTTGGAGAACATAATCATGGGGTAGAATGCATTCCAGATCGTATGTGGCCTGTCATTGAAGAGAAGAG AGCAGAGTGTGGTAAAGACCCTGGGTGTATCTGGAGACCTCCAGGAGCTTCTCTACATATGTCTTCAAATATATCTTGTATAAAAATGTGTGGAAAGCAC TCTCCCATCCAGCGGGCATTGATAACTACTCTTGGATCCGAGACATCCGGAGGATCTGTTTATATTCTTAACCTTGTCGAACCAGTAGATTTTGATTCAA GTTCTGCTATAGGTGAAATGATGCACAAAACTGCTGATTTCAATTGCACCATTTGGACTGCAGATTGCAGTTATAACTCGAATCGGGCAGTGATTGGAAC AAATGTAGGAGCTGCCCTGGTCAATTTGGAAACTGGAATGACATCATGGGTGTGTAGAAGCAAAAGTGATGTTTTGTCTCAACAGCTTGATCCATCGGGG AACGTTGTTTTATGTGGGCTAAGAAATGGAGCAATTTTGACCGTTGATGTTCGTGAAAAACAAGAGAGGGTTTCAGATAGATTTATTAGGCATAGAATAC CTTATTCATCACTGGGCAGACAGGGTCCAAGTTCTAGCAAACAATGGTTTGAGGTCAAAGGAAACATATACCCTTCTCGTACTATTTTGATGCCTTCATC TGTATGCAGTTTGGTATCGCTTCAGTCTTACGACCAGTACTTCTTGGCTAGCTCTATGGATGGATTGATTAAGCTTTATGATCAACGCATGACTAAGAGA GGTGCTGTGCAATCTTATGAAGGACATGTGAACTCTCATACTCGTTTACAGCTTGGAGTAGACCAATCTGAGAGATTTGTTATGGCAGGAGGAGAGGATT GCAGTTTGCGACTTTGGAGCATCAAGTCCGGCAAGCTGCTTTTCGAGGAAAAAATTTCTGATTCAATTCTCTCAACTGTGTGTTGGAAGAGATCTGAAAG ACTCGTGAAGACATTGAATGAAGGAAAAAGCTATGAAGAGTGCTTATCTAGGCAGAACCATAGTTGGGGGACATGGTTTGGATCACAGGAAGGACTGTTC TACATTAGTTGGTCATGA
AA sequence Show only first row Show all	>Potri.001G075300.1 pacid=42788744 polypeptide=Potri.001G075300.1.p locus=Potri.001G075300 ID=Potri.001G075300.1.v4.1 annot-version=v4.1 MPQELPGFYYDKEKNRYFPLKGPIPGSSRSSSSSNKAKKPSTNNTQESNFCRRTGVRISQLLQGRELNGNVITSSKGKCDFVEEFLKIQASKPVVWKYRS TEKIADSAMDQIHIDIHTAEGQTEANVLITGGVNGSLSLFEVGKVGEHNHGVECIPDRMWPVIEEKRAECGKDPGCIWRPPGASLHMSSNISCIKMCGKH SPIQRALITTLGSETSGGSVYILNLVEPVDFDSSSAIGEMMHKTADFNCTIWTADCSYNSNRAVIGTNVGAALVNLETGMTSWVCRSKSDVLSQQLDPSG NVVLCGLRNGAILTVDVREKQERVSDRFIRHRIPYSSLGRQGPSSSKQWFEVKGNIYPSRTILMPSSVCSLVSLQSYDQYFLASSMDGLIKLYDQRMTKR GAVQSYEGHVNSHTRLQLGVDQSERFVMAGGEDCSLRLWSIKSGKLLFEEKISDSILSTVCWKRSERLVKTLNEGKSYEECLSRQNHSWGTWFGSQEGLF YISWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17370			Transducin/WD40 repeat-like su...		Potri.001G075300 [exp]	0	1
AT3G62310			RNA helicase family protein (....		Potri.002G192500 [exp]	3.16	0.7990
AT5G12410			THUMP domain-containing protei...		Potri.009G049700 [exp]	13.63	0.7470
AT5G17270			Protein prenylyltransferase su...		Potri.004G080800 [exp]	15.65	0.7533
AT2G31740			S-adenosyl-L-methionine-depend...		Potri.001G317700 [exp]	16.97	0.7758
AT5G53770			Nucleotidyltransferase family ...		Potri.001G400800 [exp]	17.32	0.7642
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.008G112800 [exp]	24.59	0.7282
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.013G008900 [exp]	26.85	0.7429	Pt-LON_ARA_ARA.1
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.009G065300 [exp]	31.46	0.7300
AT1G26370		RID1	RNA helicase family protein (....		Potri.008G096800 [exp]	41.37	0.7083
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	42.98	0.7131

Compare expression of checked genes

Potri.001G075300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.