Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45680 253 / 5e-86 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT4G39710 155 / 1e-47 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) AT5G48580 93 / 8e-24 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 92 / 3e-23 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT4G25340 94 / 4e-22 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G05420 86 / 2e-21 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G43560 84 / 2e-19 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48570 75 / 1e-15 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 69 / 3e-14 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 67 / 8e-13 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079700 [exp] 164 / 1e-50 AT4G39710 243 / 1e-81 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Potri.007G087401 [exp] 100 / 5e-27 AT4G39710 158 / 1e-49 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Potri.012G129200 [exp] 102 / 2e-25 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.002G248200 [exp] 91 / 3e-23 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.015G130900 [exp] 92 / 1e-21 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.014G149400 [exp] 78 / 2e-16 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.007G134600 [exp] 74 / 7e-16 AT2G43560 286 / 2e-98 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.017G017500 [exp] 73 / 1e-15 AT2G43560 281 / 3e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G033400 [exp] 72 / 1e-14 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006949 [exp] 290 / 2e-100 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10024735 [exp] 213 / 1e-70 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10016811 [exp] 149 / 6e-45 AT4G39710 271 / 5e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10022507 [exp] 149 / 8e-45 AT4G39710 270 / 8e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10025889 [exp] 94 / 1e-24 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10031121 [exp] 99 / 6e-24 AT4G25340 335 / 3e-110 FK506 BINDING PROTEIN 53 (.1.2) Lus10031700 [exp] 99 / 7e-24 AT4G25340 324 / 3e-105 FK506 BINDING PROTEIN 53 (.1.2) Lus10002339 [exp] 92 / 2e-23 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1) Lus10038215 [exp] 94 / 2e-22 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003170 [exp] 90 / 2e-22 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [poplar] [flax] FKBP PF00254 [poplar] [flax] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Potri.001G075500.1 pacid=42790281 polypeptide=Potri.001G075500.1.p locus=Potri.001G075500 ID=Potri.001G075500.1.v4.1 annot-version=v4.1 ATGAACTCATTGGCATTTTCGGTTGGGAATTACACTCCCAGAAACCTCAGCGCACCCAATACAACATTGCCCGCTAAGAATCTTGACACAACAAAAGTAT CGAGTATCAAATTCTCGAGCCACAGCCAAGAAAACTTTTCTCGACAGCTGCAGCCGAAAGAAAGCCAGACTTTTTTCAAGAGAAGAGAAGCAATTGGTCT TGGCTTCTGCGCAGGCTTTCTTGATGTTCTCTTGCAACAACAGCTCACTGCAACAGCTGAAGAAGCTCCATGTGAGCTAACAGTTGCTCCTTCGGGTCTT GCCTTCTGTGACAAAATTGTGGGCACTGGCCTTGAGGCTGTCAAGGGACAGCTCATTAAGGCACATTATGTCGGGAAATTGGAGAGTGGAAAGATTTTCG ATAGCAGCTACAATCGTGGAAAGCCTCTCACGTTTCGAGTTGGGGTTGGTGAGGTCATCAAAGGCTGGGACCAAGGTATTCTAGGTGGTGATGGAATTCC TCCTATGCTAGCTGGTGGAAAACGTAAACTGAAGCTCCCTCCAGAACTGGCATATGGCATGAGAGGGGCTGGATGCAAAGGAGGTTCTTGCATCATTCCT CCAGATTCAGTCCTGTTATTCGATGTAGAGTTCATTGGAAAGGCTTGA
AA sequence Show only first row Show all	>Potri.001G075500.1 pacid=42790281 polypeptide=Potri.001G075500.1.p locus=Potri.001G075500 ID=Potri.001G075500.1.v4.1 annot-version=v4.1 MNSLAFSVGNYTPRNLSAPNTTLPAKNLDTTKVSSIKFSSHSQENFSRQLQPKESQTFFKRREAIGLGFCAGFLDVLLQQQLTATAEEAPCELTVAPSGL AFCDKIVGTGLEAVKGQLIKAHYVGKLESGKIFDSSYNRGKPLTFRVGVGEVIKGWDQGILGGDGIPPMLAGGKRKLKLPPELAYGMRGAGCKGGSCIIP PDSVLLFDVEFIGKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Potri.001G075500 [exp]	0	1
AT2G26340			unknown protein		Potri.006G220800 [exp]	2.64	0.9688
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Potri.005G183000 [exp]	3.16	0.9757
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Potri.001G186800 [exp]	3.46	0.9740
AT5G52970			thylakoid lumen 15.0 kDa prote...		Potri.016G092300 [exp]	4.00	0.9716
AT4G34620		SSR16	small subunit ribosomal protei...		Potri.013G128200 [exp]	4.89	0.9716
AT3G12345			unknown protein		Potri.008G047800 [exp]	10.24	0.9706
AT1G54500			Rubredoxin-like superfamily pr...		Potri.013G035700 [exp]	10.67	0.9699
AT3G23760			unknown protein		Potri.015G108200 [exp]	13.85	0.9667
AT1G03600		PSB27	photosystem II family protein ...		Potri.002G056300 [exp]	13.85	0.9636
AT2G38140		PSRP4	plastid-specific ribosomal pro...		Potri.016G113700 [exp]	14.49	0.9629	Pt-PSRP4.1

Compare expression of checked genes

Potri.001G075500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.