Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30900 912 / 0 VSR6, VSR3;3, BP80-3;3 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) AT4G20110 897 / 0 VSR7, VSR3;1, BP80-3;1 VACUOLAR SORTING RECEPTOR 3;1, binding protein of 80 kDa 3;1, VACUOLAR SORTING RECEPTOR 7 (.1.2) AT2G34940 791 / 0 VSR5, VSR3;2, BP80-3;2 VACUOLAR SORTING RECEPTOR 3;2, binding protein of 80 kDa 3;2, VACUOLAR SORTING RECEPTOR 5 (.1) AT2G14740 773 / 0 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) AT2G14720 769 / 0 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT3G52850 756 / 0 VSR1;1, GFS1, BP80-1;1, ATVSR1, VSR-1, VSR1, BP80B, BP-80, BP80, ATELP1 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) AT2G30290 739 / 0 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT1G21240 47 / 3e-05 WAK3 wall associated kinase 3 (.1) AT1G21250 47 / 4e-05 PRO25, WAK1 cell wall-associated kinase (.1) AT1G21210 43 / 0.0009 WAK4 wall associated kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G155200 [exp] 1123 / 0 AT1G30900 924 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.016G137300 [exp] 770 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.001G294400 [exp] 768 / 0 AT2G14740 1100 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.006G108800 [exp] 766 / 0 AT3G52850 1026 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.009G088900 [exp] 764 / 0 AT2G14740 1089 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.016G137350 [exp] 158 / 2e-45 AT3G52850 212 / 2e-66 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155300 [exp] 119 / 1e-31 AT1G30900 86 / 1e-20 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.004G191450 [exp] 44 / 0.0003 AT1G21270 474 / 7e-158 wall-associated kinase 2 (.1) Potri.004G191500 [exp] 44 / 0.0003 AT1G21270 274 / 6e-84 wall-associated kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006944 [exp] 941 / 0 AT1G30900 926 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Lus10020967 [exp] 761 / 0 AT2G14740 1077 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10012366 [exp] 753 / 0 AT2G14740 1055 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10025136 [exp] 753 / 0 AT3G52850 959 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10022737 [exp] 751 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10014176 [exp] 739 / 0 AT3G52850 980 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10002130 [exp] 733 / 0 AT2G14740 1025 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10025220 [exp] 584 / 0 AT3G52850 754 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025361 [exp] 313 / 6e-100 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain
Representative CDS sequence Show only first row Show all	>Potri.001G075600.5 pacid=42790065 polypeptide=Potri.001G075600.5.p locus=Potri.001G075600 ID=Potri.001G075600.5.v4.1 annot-version=v4.1 ATGGTACTGATGGTCACTTGCATGGCTGCTTCTCTAAAGAAACTTGCGTCTTTGTTACTTGTACTAACATTTCTAGGGAAGTGTTATGTGTTTGGTCATT TTGTGGTCGAGAAGAGTAGCCTAAGAGTGTTGTCTCCCATGAGTTTGAGATCAAAACATGACAGTGCAATAGGTAACTTTGGTATTCCAGATTATGGTGG CTACTTGGCTGGTTCTGTTATGTATCCAGATAAAGGAGCTAATGGTTGTCAGCCTTTTGATGGTGATAAGCCCTTCAAGTCTAAAGGCTCTCGCCCAACT ATTCTACTTCTTGATCGTGGAGAATGCTACTTTGCCTTGAAGGCATGGAATGCTCAACAAGCCGGAGCTGCAGCAGTGTTAGTGGCTGATAGCATAGATG AGCCTCTAATAACTATGGATTCTCCTGAGCAAAGCAATGACGCAGACGGGTATATAGAGAAGATTGGAATCCCATCAGCTCTGATAGAGAGGTCACTTGG AGAGAGCCTGAAACAAGCCTTGAAAAATAAAGAATATGTGGTGGTAAAATTGGACTGGAGAGAGTCAGTGCCTCATCCTGATCAGAGAGTTGAGTATGAG CTTTGGACAAACAGCAATGATGAATGTGGGGCTCGATGTGATGAGCAGATGGATTTTGTGAAGAATTTCAAAGGCCATGCTCAGATCCTCGAGAGGGGGG GTTACACTCTGTTCACTCCACATTATATTACTTGGTTTTGTCCCCCGCCTTTCATTCTTAGCACTCAATGCAAATCTCAGTGCATAAACCATGGGCGATA CTGTGCTCCTGATCCAGAACATGATTTGGGGGTGGGATATCAGGGGAAGGACGTGGTCTCTGAGAACTTGAGGCAACTTTGTGTCCATAGAGTTGCCAAT GAGACCGGAAGGTCTTGGGTTTGGTGGGATTTTGTGACAGATTTCCATATCAGGTGCTCTATGAAGAACAAGAGATATAGCAAAGAATGTGCTGAAGATG TTTTGAAATCACTTGATTTGCCTGTTGAGAAGATCCAAAAATGCATGGGTAACCCTGAAGCTGATGTGGAGAATGAGGTGCTCAAAACTGAGCAGGAATT GCAGGTAGGGCGAGGATCTCGTGGTGACGTTACCATCTTGCCAACAATGGTGATTAATAATGTTCAATATCGAGGAAAATTGGAGAGGGCTGCGGTGCTG AAAGCGCTATGTTCTGGATTTAAGGAGACCACTGATCCTCCAGTTTGTTTAAGTTCAGAGCTTGAGACTAACGAGTGTCTGGAAAGGAACGGAGGGTGTT GGCAGGACAAACAATTTAACACAACCGCTTGCAAGGACACATTTAGGGGAAGGGTGTGTCAGTGTCCAGTTGTGAAGGGTGTTCAGTATGCAGGAGATGG TTACATGTCTTGTAAACCTATTGGACCTGGAAGGTGTGCAGTACAAAATGGAGGATGCTGGTCAGAAACAAAACATGGATTAAGTTTCTCAGCTTGCTCA GAGTCCCAGTTGAAAGGTTGCCACTGTCCACAAGGGTTTCAGGGGGATGGCCATCATTGCGAAGATATCGATGAATGTAAGGCGCACACTTCTTGCCAAT GTGATGGTTGCTCCTGCAAAAACAAGTGGGGTGGATATGAGTGCAAATGTAAGGGGAACCGCATTTATATAAAGGAACAAGATGCTTGTATTGAAAGAAA TGGATCCAAATTTGGATGGTTCCTCACCCTTGTGATCCTAGCTGTTGTGACTGGTTCCGGTATTGCTGGTTATATATTCTACAAATACAGGCTTCGGTCT TACATGGACTCAGAGATCATGGCTATCATGTCACAATACATGCCACTTGACAACAACCAGAACAATGAAGCTCCAACACAATCCCAACCATTACGACGTC ATGACACAACTGTACGCAAGAACTAA
AA sequence Show only first row Show all	>Potri.001G075600.5 pacid=42790065 polypeptide=Potri.001G075600.5.p locus=Potri.001G075600 ID=Potri.001G075600.5.v4.1 annot-version=v4.1 MVLMVTCMAASLKKLASLLLVLTFLGKCYVFGHFVVEKSSLRVLSPMSLRSKHDSAIGNFGIPDYGGYLAGSVMYPDKGANGCQPFDGDKPFKSKGSRPT ILLLDRGECYFALKAWNAQQAGAAAVLVADSIDEPLITMDSPEQSNDADGYIEKIGIPSALIERSLGESLKQALKNKEYVVVKLDWRESVPHPDQRVEYE LWTNSNDECGARCDEQMDFVKNFKGHAQILERGGYTLFTPHYITWFCPPPFILSTQCKSQCINHGRYCAPDPEHDLGVGYQGKDVVSENLRQLCVHRVAN ETGRSWVWWDFVTDFHIRCSMKNKRYSKECAEDVLKSLDLPVEKIQKCMGNPEADVENEVLKTEQELQVGRGSRGDVTILPTMVINNVQYRGKLERAAVL KALCSGFKETTDPPVCLSSELETNECLERNGGCWQDKQFNTTACKDTFRGRVCQCPVVKGVQYAGDGYMSCKPIGPGRCAVQNGGCWSETKHGLSFSACS ESQLKGCHCPQGFQGDGHHCEDIDECKAHTSCQCDGCSCKNKWGGYECKCKGNRIYIKEQDACIERNGSKFGWFLTLVILAVVTGSGIAGYIFYKYRLRS YMDSEIMAIMSQYMPLDNNQNNEAPTQSQPLRRHDTTVRKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.001G075600 [exp]	0	1
AT2G46150			Late embryogenesis abundant (L...		Potri.003G133400 [exp]	1.41	0.7411
AT5G13810			Glutaredoxin family protein (....		Potri.001G026600 [exp]	3.46	0.7224
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.016G030900 [exp]	11.35	0.7127
AT2G41690	HSF	AT-HSFB3, HSFB3	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.016G056500 [exp]	12.00	0.6864	HSFB3.2
AT5G08240			unknown protein		Potri.001G408900 [exp]	14.14	0.6614
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.002G240900 [exp]	15.23	0.6599
AT1G12020			unknown protein		Potri.004G001800 [exp]	26.94	0.6405
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.016G129900 [exp]	32.86	0.6694	ASNAP.2
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Potri.003G097300 [exp]	38.15	0.6605	Pt-XTR4.1
					Potri.016G141900 [exp]	41.12	0.6651

Compare expression of checked genes

Potri.001G075600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.