Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57430 1189 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 582 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18485 574 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 566 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 565 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 561 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 537 / 2e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 529 / 6e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 530 / 1e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 525 / 1e-173 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 647 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 627 / 0 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 625 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 593 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 576 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 575 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 564 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 552 / 0 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 546 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001220 [exp] 1209 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 1207 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 612 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 609 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 606 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 606 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 579 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 577 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 553 / 0 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 547 / 0 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.001G075800.1 pacid=42789964 polypeptide=Potri.001G075800.1.p locus=Potri.001G075800 ID=Potri.001G075800.1.v4.1 annot-version=v4.1 ATGTCCACCTACACTCAGCACCCTCTTTCCCCAATCTCTCTTCCTTTCAGTCCGTCAACCTCTCTTCCTTCCCACCAGCAGCCTACAAAGCCTCCCATTT CCTCTTCTTCTCCAAAACCCATTTCCTCTTCTTCTCCAAAACCCATTTCCATATCACACTCTCAAGCCTCATGGATTGAATCCCTTCGCTCCAGATCCCG CTCTAATCTATTCCGTGAAGCCATTTCTACGTACATTGAAATGATTGGTTCGGGTGTTTCGCCTGATAACTTTGCCTTCCCGGCAGTCTTGAAGGCCGTG GCAGGGATTCAGGAATTGTATTTAGGGAAACAGATTCATGCCCATGTTTTCAAATTCGGGTACGGGTCGTTCTCGTCTGTGACTATAGATAATACCCTTG TGAATATGTATGGTAAGTGCGGAGGTTTAGGTGATGCCTATAAAGTGTTTGACAGAATTACTGAGAGAGACCAGGTTTCTTGGAATTCAATTATTTCTGC GTTGTGTCGGTTTGAAGAATGGGAGGTTGCAATAAAGGCGTTCAGATTGATGTTGATGGAGGGATTCGAGCCTAGTTCGTTTACTTTGGTGAGTATGGCG CTTGCTTGTTCTAATTTGCGCAAACGCGATGGCTTGTGGCTTGGCAAGCAAATTCATGGGTGTTGTTTTAGAAAGGGTCATTGGAGAACATTTTCAAACA ATGCTTTGATGGCTATGTATGCTAAACTAGGAAGACTTGATGATGCAAAAAGTTTACTAGTATTGTTTGAGGACCGTGATTTGGTTACTTGGAACAGCAT GATAAGTTCATTTTCGCAAAATGAGCGGTTTATGGAAGCGTTAATGTTCTTGCGGCTTATGGTTCTTGAGGGAGTTAAACCAGATGGGGTCACTTTTGCG AGTGTTCTTCCTGCTTGCTCCCACTTGGACCTGTTAAGAACTGGGAAAGAAATTCATGCTTATGCATTGAGAACTGATGACGTGATCGAGAATTCTTTCG TGGGTAGTGCATTAGTTGACATGTATTGCAATTGTGGACAGGTTGAAAGTGGACGTCTAGTTTTCGATAGTGTCTTGGACAGGAAAATTGGTCTTTGGAA TGCTATGATTGCTGGTTATGCACAAAGTGAGCACGATGAGAAAGCATTGATGCTCTTCATTGAAATGGAAGCTGCTGCTGGACTTTATTCAAATGCAACC ACAATGTCAAGTATCGTGCCTGCTTATGTGCGCTGTGAAGGAATTTCAAGAAAAGAAGGTATACATGGATATGTAATAAAGAGGGGTTTGGAGACAAATA GATATGTGCAAAATGCTCTAATAGATATGTACTCTAGGATGGGGGACATAAAAACTTCAAAAAGAATATTTGATAGCATGGAGGATAGAGATATAGTTTC TTGGAATACAATTATCACTAGTTATGTGATTTGTGGACGCTCTAGTGATGCACTTCTTCTGCTTCATGAAATGCAAAGAATAGAAGAAAAGTCCACGTAT GATGGTGATTACAATGACGAAAAACAAGTTCCTTTCAAACCTAACTCAATAACTCTGATGACAGTCCTTCCTGGTTGTGCTTCCCTATCAGCTTTAGCAA AGGGGAAAGAAATCCATGCTTATGCCATTAGAAATTTGTTAGCATCACAAGTCACTGTTGGAAGTGCATTAGTTGACATGTATGCAAAATGTGGCTGCTT AAATTTAGCTAGAAGAGTATTTGATCAAATGCCTATTAGAAATGTCATAACCTGGAATGTAATTATCATGGCTTATGGGATGCATGGGAAAGGAAAGGAA TCATTGGAGCTATTTGAAGATATGGTGGCGGAAGGAGCCAAAGGTGGGGAAGTAAAGCCTACTGAAGTTACTTTCATAGCATTGTTTGCCTCATGTAGTC ACTCAGGGATGGTGGATGAGGGCCTGAGCTTGTTCCATAAAATGAAAAACGAACATGGGATTGAACCTGCACCTGATCACTATGCTTGTATTGTGGACTT GGTTGGTCGAGCAGGTAAAGTGGAGGAAGCATATGGACTTGTCAATACCATGCCTTCTGGATTTGACAAAGTTGGAGCATGGAGTAGCTTGCTCGGAGCA TGTAGGATCTACCATAACATTGAAATTGGGGAAATTGCAGCTGAAAATCTCCTTCAGTTGCAACCTGATGTGGCTAGCCACTACGTTCTACTCTCTAATA TATATTCATCTGCTGGACTTTGGGATAAAGCAATGAATCTTAGGAGGAGGATGAAGGCAATGGGTGTGAAGAAAGAACCTGGTTGCAGTTGGATTGAGTA TGGTGATGAGGTGCATAAGTTTTTGGCTGGGGATTTGTCACACCCACAAAGTGAGAAGCTCCACGATTTTCTGGAGACCTTGTCAGAAAGGTTGAAAAAG GAGGGTTATGTGCCTGATACTGCTTGTGTACTCCACGATATTGACGAGGAGGAGAAAGAAACTATACTTTGTGGGCACAGTGAGAAACTGGCAATAGCTT TTGGCATACTCAACACTCCTCCTGGAACTACTATTAGAGTTGCCAAGAACCTTAGAGTTTGCAATGACTGCCATACTGCTTCTAAGTTTATCTCAAAGAT AGAAGACAGAGAAATCATCCTAAGAGATGCGAGGCGGTTCCATCATTTCAAGGATGGAACTTGTTCTTGTGGCGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.001G075800.1 pacid=42789964 polypeptide=Potri.001G075800.1.p locus=Potri.001G075800 ID=Potri.001G075800.1.v4.1 annot-version=v4.1 MSTYTQHPLSPISLPFSPSTSLPSHQQPTKPPISSSSPKPISSSSPKPISISHSQASWIESLRSRSRSNLFREAISTYIEMIGSGVSPDNFAFPAVLKAV AGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA LACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFA SVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNAT TMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYVQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTY DGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKE SLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGA CRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKK EGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.001G075800 [exp]	0	1
AT5G53080			Tetratricopeptide repeat (TPR)...		Potri.015G010800 [exp]	3.46	0.9721
AT2G22360			DNAJ heat shock family protein...		Potri.007G094900 [exp]	3.87	0.9598
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Potri.007G060400 [exp]	4.24	0.9735
AT1G09900			Pentatricopeptide repeat (PPR-...		Potri.002G109500 [exp]	4.89	0.9733
AT3G19810			Protein of unknown function (D...		Potri.010G170100 [exp]	6.70	0.9691
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.015G086500 [exp]	8.83	0.9689	CTRNP.1
AT2G27290			Protein of unknown function (D...		Potri.009G161800 [exp]	9.94	0.9628
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.016G085300 [exp]	10.95	0.9575
AT1G11430			plastid developmental protein ...		Potri.011G032900 [exp]	13.11	0.9702
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Potri.010G117200 [exp]	14.73	0.9659	APG2.1

Compare expression of checked genes

Potri.001G075800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.