Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20090 807 / 0 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 305 / 2e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 285 / 5e-86 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 281 / 1e-84 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 281 / 3e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 268 / 9e-81 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12775 250 / 7e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 249 / 2e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 246 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 243 / 2e-71 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G154800 [exp] 1172 / 0 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 332 / 1e-103 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 275 / 9e-83 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 273 / 2e-81 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 271 / 5e-81 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 263 / 3e-78 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 260 / 6e-78 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G034300 [exp] 253 / 5e-77 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G057900 [exp] 253 / 9e-77 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038377 [exp] 915 / 0 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 913 / 0 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 326 / 4e-101 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 271 / 1e-80 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 265 / 3e-78 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 268 / 5e-78 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 261 / 6e-77 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027267 [exp] 254 / 6e-75 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 255 / 1e-73 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 251 / 4e-73 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.001G075900.1 pacid=42789928 polypeptide=Potri.001G075900.1.p locus=Potri.001G075900 ID=Potri.001G075900.1.v4.1 annot-version=v4.1 ATGCCCAAATGCCAACCATTCAACACCAACTCCATCCTCAAGGCTCTCAACAACTTGTTTTCGTTCCCAAGTAAGTTCCTTTCTCTTTCTATGCACTCTA ACTTTTCAGCTCATGCCATTCCATCCACCAAAACTATTGAAACTGAACCCCTAAACCACACTCAACACTGTAACACCACTGACCAAGAAAATGGCATTGA ACCTGACCCCCCAATATCTGATAAGATATTCAAGTCGGGCCCCAAAATGGGTTCTTACAGGTTGGGTGATTCAACCTTTTATTCCCTCATTAATAACTAT GCAAATCTGGGCGATTTTAAGTCTTTGGAGAAGGTTTTGGATCGAATGAAGTGCGAAAAGAGAGTGATTTTTGAGAAATGTTTCATTGTTATCTTTAAGG CTTATGGGAAAGCTCATTTACCTGAAAAAGCTGTTGACTTGTTTGATAGAATGGCTTGTGAATTTGAGTGTAAAAGAACTGGAAAGTCGTTTAATTCGGT TCTTAATGTGATTATACAAGAGGGTTTGTTTCATCGTGCTTTAGAGTTTTATAATCATGTTATCGGTGCCAAAGGTGTCAGTATATCCCCTAATGTACTT ACTTTTAATTTGGTTATTAAGGCAATGTGTAAGGTGGGATTAGTTGATGATGCGATCCAGGTGTTTAGAGACATGACGATTAGGAAATGTGAGCCTGATG TGTACACTTATTGTACATTGATGGATGGACTGTGCAAGGCGGATAGGATTGATGAGGCAGTTTCGCTGTTGGATGAGATGCAAATTGATGGTTGTTTTCC TAGTCCTGTTACGTTCAATGTGTTAATCAACGGTTTGTGTAAGAAGGGTGATTTATCACGGGCCGCGAAGCTTGTAGACAACATGTTTCTTAAAGGATGT ATTCCTAATGAAGTAACTTATAACACACTTATTCATGGTTTGTGTCTGAAAGGGAAGCTGGAAAAGGCAATTAGTCTTTTGGATCGGATGGTATCGAGTA AATGTGTGCCTAATGTGGTCACATATGGGACAATCATTAATGGACTTGTTAAGCAAGGAAGAGCTCTTGATGGGGCTTGTGTATTAGCTTTGATGGAGGA AAGGGGGTATTGTGTTAATGAGTATGTTTACTCAACACTAATTAGTGGGTTGTTTAAAGAGGGGAAATCTCAAGAGGCAATGCATTTGTTCAAGGAGATG ACAGTAAAAGGATATGAGCTCAACACCATTGTATATAGTGCTGTTATTGATGGTTTATGCCGGGATGGAAAGCCAGATGATGCGGTGGAAGTTCTTTCTG AGATGACTAATAAGGGCTGCACACCTAATGCATACACCTGTAGCTCGCTGATGAAGGGATTCTTTGAGGCGGGTAATAGCCATAGAGCTGTTGAAGTGTG GAAAGACATGGCAAAGCATAATTTTACTCAGAATGAGGTTTGTTACAGTGTACTCATTCATGGGTTATGCAAGGATGGGAAAGTCAAGGAGGCTATGATG GTGTGGACACAGATGTTGGGCAAAGGATGTAAGCCTGATGTTGTGGCTTACAGTTCAATGATTAATGGCCTTTCCATTGCTGGCTTAGTAGAAGATGCTA TGCAACTTTATAATGAGATGCTTTGTCAGGGACCTGATTCTCAACCAGATGTGGTCACATATAACATACTATTGAATACATTGTGCAAGCAGAGTAGCAT CTCTCGTGCCATTGATCTTTTAAATAGCATGCTGGATCGGGGATGTGATCCCGACTTGGTTACATGCACCATATTCTTGAGAATGTTGAGAGAGAAGCTG GACCCACCTCAGGATGGGAGGGAGTTTCTAGATGAGCTTGTGGTTCGTCTTTTAAAGCGACAGAGAGTTTTAGGTGCATCTAAAATTGTAGAAGTGATGC TGCAAAAGCTTTTGCCACCAAAACACTCTACTTGGGCACGAGTTGTCGAAAATCTTTGTAAACCTAAGAAGGTTCAAGCGGTCATTCAGAAGTGTTGGAG CATCCTGTATTAA
AA sequence Show only first row Show all	>Potri.001G075900.1 pacid=42789928 polypeptide=Potri.001G075900.1.p locus=Potri.001G075900 ID=Potri.001G075900.1.v4.1 annot-version=v4.1 MPKCQPFNTNSILKALNNLFSFPSKFLSLSMHSNFSAHAIPSTKTIETEPLNHTQHCNTTDQENGIEPDPPISDKIFKSGPKMGSYRLGDSTFYSLINNY ANLGDFKSLEKVLDRMKCEKRVIFEKCFIVIFKAYGKAHLPEKAVDLFDRMACEFECKRTGKSFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVL TFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGC IPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEM TVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMM VWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRMLREKL DPPQDGREFLDELVVRLLKRQRVLGASKIVEVMLQKLLPPKHSTWARVVENLCKPKKVQAVIQKCWSILY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.001G075900 [exp]	0	1
					Potri.019G081450 [exp]	2.00	0.9198
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.003G002950 [exp]	2.23	0.9065
AT1G35660			unknown protein		Potri.019G083100 [exp]	3.46	0.9113
					Potri.001G076050 [exp]	3.74	0.9158
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.001G193900 [exp]	4.89	0.8462
AT2G33730			P-loop containing nucleoside t...		Potri.012G045800 [exp]	6.32	0.8938
AT1G73460			Protein kinase superfamily pro...		Potri.012G039700 [exp]	7.61	0.8441
AT4G01400			unknown protein		Potri.014G105900 [exp]	8.00	0.8577
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.013G092000 [exp]	9.16	0.8867
					Potri.002G154150 [exp]	9.48	0.8911

Compare expression of checked genes

Potri.001G075900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.