Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47630 472 / 2e-168 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024227 [exp] 483 / 4e-172 AT3G47630 474 / 5e-169 unknown protein Lus10023597 [exp] 473 / 7e-169 AT3G47630 473 / 6e-169 unknown protein Lus10023590 [exp] 234 / 1e-75 AT3G47630 240 / 2e-78 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF09139 [poplar] [flax] Tam41_Mmp37 Phosphatidate cytidylyltransferase, mitochondrial
Representative CDS sequence Show only first row Show all	>Potri.001G076200.7 pacid=42790320 polypeptide=Potri.001G076200.7.p locus=Potri.001G076200 ID=Potri.001G076200.7.v4.1 annot-version=v4.1 ATGGAGATTGACAAAATTGCCGAGCTGAAGAGTTTTCTCAAGGTTCTTCCCCCAGTTGGATTTTGTTGCGTCTATGGCTCATCTCTCCATCCAAATAATA AGGACAAGTCAACCATGGTAGATTATATTATTGGCGTATCAGATCCCAAGCAATGGCATTCTGAGAATATGGAATTGAATGAAGATCACTATGCCTCCTG GATGGTGCCCCTTGGCGGTGCAAAACTGATTACTCAAGTTGCAGATAAGATTGGTGTAGGAGTGCACTTTAATCCATTTGTAACATGGAATGACAAGATG CTCAAATACGGTGTTGTTAGGATGCATGACTTGGTTCAAGATGTACTGCATTGGGAGAGATTCTATTTGTGTGGTCGTCTACAAAAACCAGTTCATATAC TTGTGGATAATTTGGATATTGGAGATGTAAACTCTGTCAATCTGAGGGCTGCAGTCTCTGCTGCTCTTCTCCTTTTGCCATCCAAATTCACCGAGGAAGA TTTGTACTCCAAAATATGTAGCCTCTCATATATGGGTGACTTGCGCATGCTTTTTGCAGAGGATAAAAATAAGGTGAAGAGGATTGTTGAAGGACAGTTT GGTTTATTCCAATCGATGTATAAACCATTTCTAAAAGAATACGAGGCTAAAGAGTTACTGACATTCTCATTGCCTAATTCTCATCAGGCTACTATCTCTC AGGACTGCAGTTTATCAATGACTCATTCCCTAGTTCATTCACTTCCTCCCCTTGTCAGAAGAAAAATGGGGATGAAGCTAGGAGAGATGCAAGTGCTGAA GGATTCTGGTCGAGTTTTACATGAAGTCGTGATTGGTTCAAGAGAAGAGGCTGCCAGGAGTATGCAGAGGATTATCAGGCGTACTGTTATGGTTTCAAGT GCAAGGCAGGCTGTCTCTGGTTTCCTGGCTGCTGGTGGTATTAATGCTACTAGATATCTTGCTAATAAAGTGCGCAAGGCTTGGAAATCTTGGACATGA
AA sequence Show only first row Show all	>Potri.001G076200.7 pacid=42790320 polypeptide=Potri.001G076200.7.p locus=Potri.001G076200 ID=Potri.001G076200.7.v4.1 annot-version=v4.1 MEIDKIAELKSFLKVLPPVGFCCVYGSSLHPNNKDKSTMVDYIIGVSDPKQWHSENMELNEDHYASWMVPLGGAKLITQVADKIGVGVHFNPFVTWNDKM LKYGVVRMHDLVQDVLHWERFYLCGRLQKPVHILVDNLDIGDVNSVNLRAAVSAALLLLPSKFTEEDLYSKICSLSYMGDLRMLFAEDKNKVKRIVEGQF GLFQSMYKPFLKEYEAKELLTFSLPNSHQATISQDCSLSMTHSLVHSLPPLVRRKMGMKLGEMQVLKDSGRVLHEVVIGSREEAARSMQRIIRRTVMVSS ARQAVSGFLAAGGINATRYLANKVRKAWKSWT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47630			unknown protein		Potri.001G076200 [exp]	0	1
AT2G04660		APC2	anaphase-promoting complex/cyc...		Potri.008G089600 [exp]	7.21	0.8190
AT1G10417			unknown protein		Potri.008G190600 [exp]	7.48	0.8553
AT1G71840			transducin family protein / WD...		Potri.013G116900 [exp]	12.64	0.8537
AT4G31060	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G080300 [exp]	16.06	0.8345
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122932 [exp]	17.88	0.8408
AT4G02425			unknown protein		Potri.002G204700 [exp]	18.00	0.7530
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Potri.008G063100 [exp]	19.74	0.8385	SYP81.1
AT5G19300			unknown protein		Potri.010G091400 [exp]	22.20	0.8102
AT2G34260		WDR55	human WDR55 \(WD40 repeat\) ho...		Potri.004G095000 [exp]	23.15	0.7605
					Potri.001G389650 [exp]	28.14	0.8260

Compare expression of checked genes

Potri.001G076200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.