Plant FIBer expression Database

Potri.001G076300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G076300.1 pacid=42792071 polypeptide=Potri.001G076300.1.p locus=Potri.001G076300 ID=Potri.001G076300.1.v4.1 annot-version=v4.1
ATGTCTTACTCAAAGTTCTCTGATGCTAACGGTGCTGTCAGTAACGAGAACACATCCTTGAATGCTGCTCTGATAAACAGTGTGAGGAAAAGAATGGCTG
GCATGAACAAGCATATTGCAAAATATAAGAATGCAAACACCTCCTTGGTGAAGGAAAATGTCTACCTGAAGAACCGACAAGCTTGGATGACAAAATCTCA
GAAGCGTCAGAAGAAAACCTTGGTCTGCTTGAAGGACAAGTACAATGAACTGACTGACAAGGCCACAGGCCTTTCCAATCTACTGTTGGAGTCCTATGCT
CAGCTTCAAGAAAGAAATACGGAGCTTGAAGCAAGCAATGCACAGCTGAGGGAAAGAAATGCTGTGCTAGAGAATGAAAGTAATGCACGTGATGAGGTGA
ACAAGGAAAATGAGCATGAACTGGATCAGGCCAAAATTTAA
AA sequence
>Potri.001G076300.1 pacid=42792071 polypeptide=Potri.001G076300.1.p locus=Potri.001G076300 ID=Potri.001G076300.1.v4.1 annot-version=v4.1
MSYSKFSDANGAVSNENTSLNAALINSVRKRMAGMNKHIAKYKNANTSLVKENVYLKNRQAWMTKSQKRQKKTLVCLKDKYNELTDKATGLSNLLLESYA
QLQERNTELEASNAQLRERNAVLENESNARDEVNKENEHELDQAKI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G076300
[exp]
0 1
AT3G22060 Receptor-like protein kinase-r... Potri.007G120300
[exp]
16.43 0.8466
AT4G21895 DNA binding (.1) Potri.011G001901
[exp]
18.05 0.8371
AT5G10830 S-adenosyl-L-methionine-depend... Potri.007G103200
[exp]
26.07 0.7625
AT1G14700 PAP3, ATPAP3 purple acid phosphatase 3 (.1.... Potri.008G139100
[exp]
27.49 0.8198 Pt-PAP8.3
AT5G09220 AAP2 amino acid permease 2 (.1) Potri.001G470200
[exp]
30.19 0.8294
AT4G05200 CRK25 cysteine-rich RLK (RECEPTOR-li... Potri.011G030650
[exp]
35.88 0.8050
AT1G28130 GH3.17 Auxin-responsive GH3 family pr... Potri.003G161300
[exp]
36.66 0.8225 8
AT1G56320 unknown protein Potri.005G019200
[exp]
37.22 0.8143
AT4G26200 ACS7, ATACS7 1-amino-cyclopropane-1-carboxy... Potri.018G067000
[exp]
53.35 0.8127 Pt-ACS3.2
AT3G46540 ENTH/VHS family protein (.1) Potri.008G055600
[exp]
55.42 0.8138

Potri.001G076300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.