Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33410 1511 / 0 NUP160, SAR1, ATNUP160 ARABIDOPSIS NUCLEOPORIN 160, SUPPRESSOR OF AUXIN RESISTANCE1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151850 [exp] 50 / 2e-07 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038728 [exp] 1810 / 0 AT1G33410 1387 / 0.0 ARABIDOPSIS NUCLEOPORIN 160, SUPPRESSOR OF AUXIN RESISTANCE1 (.1.2) Lus10039130 [exp] 1774 / 0 AT1G33410 1357 / 0.0 ARABIDOPSIS NUCLEOPORIN 160, SUPPRESSOR OF AUXIN RESISTANCE1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF11715 [poplar] [flax] Nup160 Nucleoporin Nup120/160
Representative CDS sequence Show only first row Show all	>Potri.001G078600.1 pacid=42789995 polypeptide=Potri.001G078600.1.p locus=Potri.001G078600 ID=Potri.001G078600.1.v4.1 annot-version=v4.1 ATGAGTGCCAGGGTGGGGATGGAGGTTCCCATTATCGGCACTGATTCCATCAAATTCATCGACATATCTGTCCCCGACGTCGGCGACGCTGATTTATCAA CCACTTCTTCTGCTACTGCTGCTTCCATTGCTATTACAACTTCTCTCACTGAAGATTATTGCTCCTCCTCCATCACTGGCGATCCTCCTCTCTCTTTCAT TTGGAGGATTCATAAGTCCCAGCCTAAAACTCTCGAGTTACTTCAACTCTCTGCTACTAAAGACTTCCCCGGGACAACCGGGTTGCGAATTACCTTTCCC CATGCCCTTTGCCCTTTCGCTTATGTTTGCCAGAATCAGAGCCAGATGCCTGCTTTCTCTACTACAAATCCATACTTGCTCTATGCATTGACAATTTCGG GAGTCGCTTATCTTATCAAACTCCGAAACATTACTGCTTATTCTTCCTTGCCTGTTTTACCAAGGGATGAGGTTACCCAGTTTAGTTTGAATGATCGTGA TTCCAGTAATTCCGAGCCTGCGGCAATAACTAGTGTAGCAGCCACCGCTGGATGTCTTGCAGTAGGTAGAATTGATGGATCTGTTGCTTATTTTCAACTT GGATTGCTTCACCATAGTACCCCTGGTTTTGTGAATGAGTTGCGGGATGATTCAGGGATCGGTCGTTTGTGGGGTTTCATGTCAAGGGGTAGGATGGTTG GAGCTGTGCAGGATTTGGTAATATCGGAGGTACATGGGCTAAAACTTTTGTTTGTGCTTCATTCTGATGGGATGTTACGAGTATGGAACTTGTCCTTCCG CAGCAAGATTTTAAGTCATGCATTGGGCATTCCGAATTCAGAAGGAGTGACATTTGCCAGATTGTGGGTCGGTGAAGCTAAGGAAGATGCCAGCATAACT CCATTAGCTGTCTTGTGTAGGCATAATTTGGACATTAGGAGGGAGATGATTCATGTCTATCGCCTTCACTGTACTTTGGGGGACAAGACTGCTTTGTCAG TAGAGTCTTCAATGCAAGATATTTCTCTTGAGGAGGGGGAATGCATCGATGTCAAACTCACTTCAGACAAGATATGGATATTAAAAGACAACGGATTGCT ATCTCATAAATTGTTTCATATTGATACGGAAGATGCCTGCTGCTATACTTTGCAGGAAGAATTTGTTGCTGAGCAGCTATTTCAAAGTTCCGAACTTTCT TCAGATGATCTTCTTTGGATTACGTATTCATTATTTTCATCTATGAAGGAAAACATTGTACCGTTTGTATCTTCTATCTTTATACGTAGATTGCTTCTCC CTGGTGTTCATCACAATGACGTGCTTCGTTCAACTTTGCTGGATTACCACAGGCACTGGACTGATATGGAATTCCAGTCCTTAACTGTTGATGGGCTCAA AAAGGAAGTTCGATCAGTGATTGAAAATCAGGGTGTCAGTGAAAGTCCAATGTCAGTATTTTGCCACTGGAAAAATTTCTGCGCCCGCTATTTCCATTAC TGGTGCAAGAACAATTCACCATGTGGTTTGTTAGTTCAGTCCTCTGCAGGTGCTGTTTGTTTAGTCAGAAAGAATTCAGTGTCTCTATTTCGTGATTTGG AAAACATCGAGATGATTATCGATGGTTCTTCTGATGAACTTGTCGATCTTGCAAGCTTCGGATTGGATTTATCCAATGACGAGTCTGAACGTGGGATTCT ATTAGAAGTTCTGAGATGCATTATCAGTATGAGCCAACACCTTGGGAAACCAGCATCTGCTGTATTTTATGAATCACTCATTAGCACACCCATTGTTTCA TCAGAGGAAATTGTTCCACGCTTGCTGAAGATTCTGGAAACTGGATACAGTTCATCAGTATCATCAGATCACATATCAGATCTTGGAGGTGATTTTGCTT GGGAAAAGGAGCTGGCAGATCGCAAAAGTTTGAGGAAGTTCTCTATTGACATGCTATTATCTCTGCATACATTATCCAAAAAAGCTACATCGTGGAGCAA AGTTTTGAATGTCATTGAAAGCTATCTACAATTTCTTGTACCCCGGAGGATCATACAAAAACTAAATGCTGAAATGTCATTTGATATCAATACTTCTATT TTGGTCCAGGCTACTTCTCAAATTGCTAAGTTTATCTTTGAGTCTGCATTGGACGTCTTTCTGTTTGTAAGCTATCTTCTGAAAATCAGTGGACAGATTA ATATGTTGCATGATGATACATCCAGAATACAACTTGAATTCATTCCTATGATTCAAGAAATTGTTTCTGAGTGGTTGATTATCCATTTCCTCAGCACCAC ACCTTCTGAATCTCCTTCAATTGAAGATTTTAGTTCCCAACTCTCATCATTGCAAATTGATAACAAAACTGACAGAAGATCGTGGAATGAAAAACTTGGG AAATGTGATTTTACATTGGCTTTTATACTTTCACTAACATTTCACACTTCCTCTGGAGACCCAAGCCAACCTTCTTCGCATTGTCTCCCAAATCCACAAG AGATAGTTAATTTAGCAAGAGGCTTTACAAGCTGGATTATCTGGGGCAAAACTGGGGAAGAATCTACTTCTTTCCTAAGGCGTTCATCTGAGATTGCTTT AATCCTCCTTAGGCATGGTCAATATGGTGCCGTTGAGTATCTGCTCACATTTGTGGAGGCTAATTCACGGAGGGAGAAGGTATCTAGAAGCATTCAAGAT AATGATGGTGATTGGTGCATTCTTCATCATCTTCTAGGATGCTGCCTCCTTGCTCAAGCCAGGTATGGGTTCCAGGGAGTGTTGAAAGAGAAGAAAGTTT GTGAAGCCATTCGCTGTTTTTTCAGAGCTTCATCTGGACAAGGAGCTTCCAAAGCTTTGAAAGATTTGTCTCAAGATGCAGGATTGCCCAATTTTGGTTT TGATGATTGTGCCTCACCTGCTGCTTGGAAGCTTCATTACTACCAGTGGGCAATGCAGATATTCGAACAATATAACATTAGTGAAGGTGCCTGTCAGTTT GCACTTGCTGCTCTGGAACAAGTTGATGAAGCTCTTAGTCAGAAAGATGATTCATCTGGGACAAATGTTATCAATGAATCAGACACTACTATCAAAGGAC GGCTTTGGGCGAATGTCTTCAAGTTTACTTTAGACCTTGATCACTTATACGATGCATATTGTGCAATACTTTCAAATCCAGATGAGGAGAACAAGTACAT CTGCTTGAGGCGTTTCATAATTGTTCTCTATGAGCGTGGGGCAATGAAGGTACTTTGTAATGGTCAGTTACCCTTCGTTGGTTTAGCAGAGAAGATTGAG CAAGAGCTTGCTTGGAAGGCAGAACGTTCTGAAATCTTGGCAAAGCCGAACCCATATAAGTTGCTTTACGCATTTGAAATGCACCGACATAACTGGAGAC GGGCAGCAAGTTACATATATCAGTATTCAGCTCGTTTGAGGACTGAAGTAGATCTGAAAGATCACCAGCGCATGTCACTTGTGCTGCAAGAAAGGCTAAA TGGCCTCTCTGCTGCGATCAATGCACTGCATCTCATCCAATCTGAATATGCTTGGATAAATCCTCTGTTTGGGGGAAACTCTGTTCATAACGAGAGTTAT CCAAGTAAAAAGGCTAAAAAATTGGTGAAAGAACACTTGACTGGGAGTGATGTTCAGGCCCAAAGGCTGCAGTTTTACATTGATGTTGAGAAACTTGAAA AGGAGTTCGTTCTAACATCCGCAGAATATTTGCTTTCATTAGCAAATGTCAAATGGACATTCACTGGAACAGAAAAGGCTCCATCAGATTTGGTTGATCT CTTGGTCGAGGCAAACTTATATGAAATGGCATTTACAGTTCTTTTAAAATTCTGGAATGGTTCAGGATTGAATAGGGAATTGGAAAGAGTTTTCTCAGCT ATGTCATTGAAATGCTGTCCCAATAAACTGGGCTCCTCATCTACCAGGATGCATGGTCTTTTGTTGACATCCTCAAAAGAAATAGTTGTTCACGGTTCAC CTGACATGGGTCCTACTTCTCAGAATCATCAGGGGAATGCTCAGTGGGAGACTCTTGAGCTTTATCTTGAAAAATATAGAACTTTTCATACTGGATTACC AGCAACTGTTGCTGAAACACTTCTCCGCACAGATCCTCAGATTGAATTGCCTCTGTGGCTGGTACATATGTTCAAGGAGAGTCGAAGGGACAGGACCTGG GGGATGGCTGGCCAAGTATCAAATCCTGCATCTTTGTTCAGGCTATATGTTGATTATGGTCGATTTACAGAAGCTACAAATCTGTTGCTTGAGTATACCG AATCATTTGCATCAGTGAGACCGTCGGACTTGATTAATCGGAAAAAGCCATTTGCGGCATGGTTTCCATACACAACAATAGAGCGCCTATGGTGCCAGCT TGAGGAATTGAGTAATTTGGGTCACATGGTTGATCACTATGGGAAGCTCAAAAGTCTATTGCATGGAGCTTTGCAGAACCACCTCAAGCAGGTGAAGGTG GACTCCGAAGATGCATTATCCGCTGCTGCCTGCTAA
AA sequence Show only first row Show all	>Potri.001G078600.1 pacid=42789995 polypeptide=Potri.001G078600.1.p locus=Potri.001G078600 ID=Potri.001G078600.1.v4.1 annot-version=v4.1 MSARVGMEVPIIGTDSIKFIDISVPDVGDADLSTTSSATAASIAITTSLTEDYCSSSITGDPPLSFIWRIHKSQPKTLELLQLSATKDFPGTTGLRITFP HALCPFAYVCQNQSQMPAFSTTNPYLLYALTISGVAYLIKLRNITAYSSLPVLPRDEVTQFSLNDRDSSNSEPAAITSVAATAGCLAVGRIDGSVAYFQL GLLHHSTPGFVNELRDDSGIGRLWGFMSRGRMVGAVQDLVISEVHGLKLLFVLHSDGMLRVWNLSFRSKILSHALGIPNSEGVTFARLWVGEAKEDASIT PLAVLCRHNLDIRREMIHVYRLHCTLGDKTALSVESSMQDISLEEGECIDVKLTSDKIWILKDNGLLSHKLFHIDTEDACCYTLQEEFVAEQLFQSSELS SDDLLWITYSLFSSMKENIVPFVSSIFIRRLLLPGVHHNDVLRSTLLDYHRHWTDMEFQSLTVDGLKKEVRSVIENQGVSESPMSVFCHWKNFCARYFHY WCKNNSPCGLLVQSSAGAVCLVRKNSVSLFRDLENIEMIIDGSSDELVDLASFGLDLSNDESERGILLEVLRCIISMSQHLGKPASAVFYESLISTPIVS SEEIVPRLLKILETGYSSSVSSDHISDLGGDFAWEKELADRKSLRKFSIDMLLSLHTLSKKATSWSKVLNVIESYLQFLVPRRIIQKLNAEMSFDINTSI LVQATSQIAKFIFESALDVFLFVSYLLKISGQINMLHDDTSRIQLEFIPMIQEIVSEWLIIHFLSTTPSESPSIEDFSSQLSSLQIDNKTDRRSWNEKLG KCDFTLAFILSLTFHTSSGDPSQPSSHCLPNPQEIVNLARGFTSWIIWGKTGEESTSFLRRSSEIALILLRHGQYGAVEYLLTFVEANSRREKVSRSIQD NDGDWCILHHLLGCCLLAQARYGFQGVLKEKKVCEAIRCFFRASSGQGASKALKDLSQDAGLPNFGFDDCASPAAWKLHYYQWAMQIFEQYNISEGACQF ALAALEQVDEALSQKDDSSGTNVINESDTTIKGRLWANVFKFTLDLDHLYDAYCAILSNPDEENKYICLRRFIIVLYERGAMKVLCNGQLPFVGLAEKIE QELAWKAERSEILAKPNPYKLLYAFEMHRHNWRRAASYIYQYSARLRTEVDLKDHQRMSLVLQERLNGLSAAINALHLIQSEYAWINPLFGGNSVHNESY PSKKAKKLVKEHLTGSDVQAQRLQFYIDVEKLEKEFVLTSAEYLLSLANVKWTFTGTEKAPSDLVDLLVEANLYEMAFTVLLKFWNGSGLNRELERVFSA MSLKCCPNKLGSSSTRMHGLLLTSSKEIVVHGSPDMGPTSQNHQGNAQWETLELYLEKYRTFHTGLPATVAETLLRTDPQIELPLWLVHMFKESRRDRTW GMAGQVSNPASLFRLYVDYGRFTEATNLLLEYTESFASVRPSDLINRKKPFAAWFPYTTIERLWCQLEELSNLGHMVDHYGKLKSLLHGALQNHLKQVKV DSEDALSAAAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Potri.001G078600 [exp]	0	1
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Potri.006G119600 [exp]	1.00	0.9207
AT4G10320			tRNA synthetase class I (I, L,...		Potri.017G033200 [exp]	1.41	0.9070
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Potri.002G258766 [exp]	2.44	0.8785
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Potri.001G111300 [exp]	3.87	0.8713
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Potri.014G130800 [exp]	9.48	0.8451
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Potri.006G267500 [exp]	13.22	0.8341	Pt-EIF3.6
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.016G084500 [exp]	19.89	0.8015
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Potri.010G106200 [exp]	21.72	0.7960	ATCPSF73.1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.006G132400 [exp]	23.87	0.8025
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.001G003900 [exp]	28.56	0.8211

Compare expression of checked genes

Potri.001G078600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.