Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24250 550 / 0 ATMLO13, MLO13 MILDEW RESISTANCE LOCUS O 13, Seven transmembrane MLO family protein (.1) AT4G02600 483 / 1e-167 MLO1, ATMLO1 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2) AT2G44110 434 / 2e-148 ATMLO15, MLO15 MILDEW RESISTANCE LOCUS O 15, Seven transmembrane MLO family protein (.1.2) AT1G61560 353 / 4e-116 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) AT2G39200 346 / 2e-113 ATMLO12, MLO12 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) AT1G11310 345 / 7e-113 PMR2, ATMLO2, MLO2 POWDERY MILDEW RESISTANT 2, MILDEW RESISTANCE LOCUS O 2, Seven transmembrane MLO family protein (.1.2) AT2G33670 335 / 6e-110 ATMLO5, MLO5 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1) AT5G53760 330 / 5e-107 ATMLO11, MLO11 MILDEW RESISTANCE LOCUS O 11, Seven transmembrane MLO family protein (.1.2) AT1G26700 326 / 1e-105 ATMLO14, MLO14 MILDEW RESISTANCE LOCUS O 14, Seven transmembrane MLO family protein (.1) AT1G42560 322 / 1e-105 MLO9, ATMLO9 ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 9, Seven transmembrane MLO family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G069900 [exp] 480 / 2e-166 AT4G02600 720 / 0.0 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2) Potri.017G000800 [exp] 462 / 1e-159 AT4G02600 640 / 0.0 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2) Potri.017G000900 [exp] 461 / 3e-159 AT4G02600 639 / 0.0 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2) Potri.007G146900 [exp] 451 / 2e-155 AT4G02600 613 / 0.0 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2) Potri.009G011900 [exp] 370 / 2e-122 AT1G61560 603 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.010G220500 [exp] 355 / 1e-116 AT1G61560 743 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.007G064200 [exp] 349 / 1e-114 AT2G39200 502 / 4e-173 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Potri.008G041400 [exp] 347 / 1e-113 AT1G61560 768 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.005G099200 [exp] 340 / 6e-111 AT2G17480 624 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026276 [exp] 556 / 0 AT4G24250 576 / 0.0 MILDEW RESISTANCE LOCUS O 13, Seven transmembrane MLO family protein (.1) Lus10001336 [exp] 437 / 3e-149 AT4G02600 644 / 0.0 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2) Lus10027093 [exp] 407 / 5e-138 AT4G02600 580 / 0.0 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2) Lus10008340 [exp] 405 / 2e-137 AT4G02600 576 / 0.0 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2) Lus10019630 [exp] 348 / 1e-113 AT2G17480 711 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) Lus10040388 [exp] 342 / 3e-111 AT2G39200 735 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Lus10041410 [exp] 334 / 4e-108 AT1G61560 769 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Lus10023506 [exp] 335 / 7e-108 AT2G39200 731 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Lus10030729 [exp] 330 / 8e-108 AT2G33670 628 / 0.0 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1) Lus10036519 [exp] 332 / 1e-107 AT1G61560 763 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03094 [poplar] [flax] Mlo Mlo family
Representative CDS sequence Show only first row Show all	>Potri.001G078800.1 pacid=42789907 polypeptide=Potri.001G078800.1.p locus=Potri.001G078800 ID=Potri.001G078800.1.v4.1 annot-version=v4.1 ATGGCGGAAGAATCCAAATCTTTGCAGTACACACCTACATGGGTGATTGCTGCTGTCTGTTTTGTCATTGTTCTCGCCTCCATTTTTGCAGAGCGAGGTC TTCATAAACTGGGAAAGTTCTTGAGGAATACGGAGCAAGATGCATTGTTTGAAGCCTTGCAAAAATTAAAAGAAGAATTGATGCTTTTAGGGTTCATTTC CCTTCTGCTAACAGTTACCCAAAATACAATAAGCCGCATATGCATCCCACCTCAGCTTGCTATTACCATGTTGCCATGCAAGAGAGAAACTGAGAGCAGC AACCACGAAAAAATCTATAATCAAGCTATAAACAATCGACGTCATCTACTATCTGCAACTAATAGTGCAGAACGTTGTGCTCGTGAGGGGAAGGTTCCAT TGGTGTCTGTGGAAGCATTGCACCAACTGCATATTTTCATCTTTGTGTTGGCAATTGTCCATGTTATCTTTTGTGTATCTACAATGATTCTTGGAGGGGC AAGGATACGACAATGGAAGACTTGGGAGGATTCCATAAGACATCCATCAGAAACATTCAGAGATCAAGCAAAGCATCAACATGAACACCATTATTTTCAC AAGTTCATTAAAAAACACGAAAAAGGATATTGGAGAAAGTCAGCTGTTTTAAGTTGGCTGATAGCATTCTTCAAACAATTTTATCACTCCATTACCAAAT CAGACTACATTGCTCTTCGAAAAGGATTTATCACAGCGCATTGTCCCCATGTGTTGAATTTTGATTTTCACAATTACATGATGCGGACACTGCAGATTGA TTTCAAAAGAATTGTTACCATAAGCTGGTATCTGTGGCTCTTTGTTGTGATGTTTTTGCTGATGAATGTGGAAGGGTGGCATTCATTTTTTTGGCTGTCC TTTTTACCAGTAATTCTTCTGCTACTCGTTGGCGCTAAGTTAGAACACATTATCACTAGTTTAGGCCACAGAGTTGCAGAGAAGACAGTTCCTATCGATG AAGCACGAGTACAGCCTTCAGATGAACATTTCTGGCTTGAGAAACCTGCCATTGTTCTTGACTTGATTCAGTTCATTCTGTTTCAGAATTCATTTGAGAT TGCTTTCTTCTTCTGGATTTGGAGCACATACGGATTCCGCTCATGCATCATGGAAAGAGTGGGCTACATTGTGCCAAGGCTTATTATGGGTTTAGTTGTT CAAGTTCTATGCAGTTACAGCACCTTGCCTTTGTATGCTCTAGTCTCACAGATGGGCACCAGTTTTAGGAAAGGGATGTTTGGTCAGGATGTGGAAGCGG CAATAGGAATCTGGGCAGGCGGAGCAAAGGACAAGAGGGACCCAAGCGAGAACCACGGAGCACGTATGCATAAACTAGCCACAGAATCATCTCATAGTGC GGCACAAGAAATGGTTATTGATGGAGGCACAGAGCTTTCTTCTGTGACCCAAGCGCCTGTATCTTGA
AA sequence Show only first row Show all	>Potri.001G078800.1 pacid=42789907 polypeptide=Potri.001G078800.1.p locus=Potri.001G078800 ID=Potri.001G078800.1.v4.1 annot-version=v4.1 MAEESKSLQYTPTWVIAAVCFVIVLASIFAERGLHKLGKFLRNTEQDALFEALQKLKEELMLLGFISLLLTVTQNTISRICIPPQLAITMLPCKRETESS NHEKIYNQAINNRRHLLSATNSAERCAREGKVPLVSVEALHQLHIFIFVLAIVHVIFCVSTMILGGARIRQWKTWEDSIRHPSETFRDQAKHQHEHHYFH KFIKKHEKGYWRKSAVLSWLIAFFKQFYHSITKSDYIALRKGFITAHCPHVLNFDFHNYMMRTLQIDFKRIVTISWYLWLFVVMFLLMNVEGWHSFFWLS FLPVILLLLVGAKLEHIITSLGHRVAEKTVPIDEARVQPSDEHFWLEKPAIVLDLIQFILFQNSFEIAFFFWIWSTYGFRSCIMERVGYIVPRLIMGLVV QVLCSYSTLPLYALVSQMGTSFRKGMFGQDVEAAIGIWAGGAKDKRDPSENHGARMHKLATESSHSAAQEMVIDGGTELSSVTQAPVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Potri.001G078800 [exp]	0	1
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340400 [exp]	2.64	0.9747
AT3G18670			Ankyrin repeat family protein ...		Potri.005G057900 [exp]	3.16	0.9683
AT5G45320			unknown protein		Potri.003G046000 [exp]	3.74	0.9460
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340200 [exp]	3.87	0.9665
AT4G37445			unknown protein		Potri.007G051200 [exp]	5.00	0.9570
AT5G51160			Ankyrin repeat family protein ...		Potri.014G051100 [exp]	5.29	0.9640
AT5G62200			Embryo-specific protein 3, (AT...		Potri.010G214400 [exp]	8.77	0.9548
AT1G54400			HSP20-like chaperones superfam...		Potri.019G037700 [exp]	9.16	0.9556
AT3G15680			Ran BP2/NZF zinc finger-like s...		Potri.006G251300 [exp]	11.48	0.9506
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Potri.012G031200 [exp]	11.53	0.8661

Compare expression of checked genes

Potri.001G078800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.