Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	KOR1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49720 904 / 0 TSD1, IRX2, DEC, RSW2, OR16PEP, KOR1 ,AtGH9A1 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) AT4G24260 757 / 0 ATGH9A3 ,KOR3 glycosyl hydrolase 9A3 (.1) AT1G65610 599 / 0 ATGH9A2 ,KOR2 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) AT1G19940 305 / 2e-96 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT2G32990 299 / 3e-94 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G75680 297 / 3e-93 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT1G64390 298 / 1e-92 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 296 / 1e-91 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G02800 289 / 1e-90 ATCEL2 cellulase 2 (.1) AT4G02290 285 / 1e-88 ATGH9B13 glycosyl hydrolase 9B13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151700 [exp] 1041 / 0 AT5G49720 910 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.008G079500 [exp] 646 / 0 AT1G65610 699 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.010G177300 [exp] 633 / 0 AT1G65610 724 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.005G188500 [exp] 405 / 1e-133 AT5G49720 418 / 9e-139 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.005G237700 [exp] 303 / 7e-96 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.002G023900 [exp] 302 / 4e-95 AT1G19940 672 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.001G092200 [exp] 302 / 3e-94 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.014G157600 [exp] 299 / 4e-94 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.003G139600 [exp] 301 / 1e-93 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012162 [exp] 919 / 0 AT5G49720 989 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026275 [exp] 899 / 0 AT5G49720 986 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026863 [exp] 602 / 0 AT1G65610 747 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Lus10007584 [exp] 560 / 0 AT5G49720 565 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10036331 [exp] 445 / 3e-149 AT5G49720 483 / 6e-164 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10010029 [exp] 433 / 3e-146 AT5G49720 465 / 1e-158 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10018918 [exp] 379 / 9e-124 AT5G49720 423 / 1e-140 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10028619 [exp] 374 / 3e-121 AT5G49720 410 / 3e-135 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10001833 [exp] 307 / 5e-96 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10032377 [exp] 307 / 8e-96 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.001G078900.1 pacid=42789460 polypeptide=Potri.001G078900.1.p locus=Potri.001G078900 ID=Potri.001G078900.1.v4.1 annot-version=v4.1 ATGAGCATGTATGGTAGAGATCCTTGGGGAGGATCCCTGGAGATAAATGCAGCAGATTCGGCAACAGATGATGATAGGAGCAGGAACTTGAATGACTTAG ACAGGGCAGCTTTGTCAAGGCCGTTGGATGAGACTCAACAGAGTTGGTTACTGGGTCCAGCTGAGCAAAAGAAGAAGAAGAAATATGTGGATCTGGGTTG TATCATTGTTAGTCGCAAGATCTTTGTGTGGACTGTTGGGAGTATTGTTGCTGCTGCTCTCCTGGTTGGTTTGATTACTGTTATTGTTGAAGCTGTGCCT CGCCATCGTCACAATCATACCCCCGCTGATAACTACACCCTTGCTCTACACAAGGCACTCATGTTCTTCAATGCGCAAAAATCAGGAAAGCTTCCAAAGC ATAATAATGTGTCATGGAGGGGAAGCTCGTGTTTGAGCGACGGGAAAGGTAAACAAGGTAGTTTTTACAAAGATCTGGTGGGTGGATATTATGATGCTGG GGATGCCATCAAGTTTCACTTCCCTGCTTCTTTTGCGATGACAATGTTGAGCTGGAGTGTTATAGAATATAGTGCGAAATATGAAGCTACTGGGGAGCTT AACCATGTCAAAGAAATTATTAAGTGGGGAGCTGATTACTTTCTTAAGACATTTAACAGTTCTTCTGATACCATCAACACGATGGTTGCCCAGGTTGGCA CGGGGGATACTTCTGGTGGGAGTACCACTCCAAATGATCATTACTGCTGGATGCGTCCTGAGGACATTGATTATGAAAGACTTGTAACTGAATGCAGCCA TTGCTCTGATCTTGCTGCTGAAATGGCTGCTGCCTTAGCTTCTGCATCCATTGTTTTCAAAGATAACAAGGCCTACTCTCAGAAACTTGTTCATGGTGCC AGAACTCTCTTTCAATTTGCAAGAGATCAGCGAGGTAGATACAGTGAAAGAGGGTCAGAAGCTGCCATTTTCTATAATTCAACTAGTTACTGGGATGAAT TTGTTTGGGGTGGAGCTTGGCTGTACTATGCAACTGGAAATAATTCCTATCTTCAGCTTGCTACAAATCCTGGCATAGCCAAGCATGCTGGTGCTTTTTG GGGAGGGCCGGACTATGGTGTCCTTAGCTGGGACAACAAGCTTGCTGGTACTCAGCTACTTTTGAGCCGTTTAAGATTGTTCTTGAGCCCTGGTTATCCG TATGAAGAAATACTAAGGACATTTCACAACCAGACCAGTATAATCATGTGTTCGTACCTGCCAATTTTCACGAAGTTTAATAGAACAAGAGGAGGCTTGA TCGAGTTAAATCATGGAAGGCCTCAGCCCCTTCAGTATGTTGTCAACGCTGCCTTCCTAGCTACCCTATATAGTGATTATCTTGAGGCTGCTGATACACC TGGATGGTACTGTGGACCAAATTTTTACTCTACTGACGTGTTGCGTGATTTTGCCAAGACTCAGATTGATTACATCCTGGGCAAAAATCCTCGTAAAATG AGCTATGTTGTGGGTTTTGGTAATCATTATCCAAAACATGTCCACCACAGAGGTGCATCTATCCCTAAGAACAAGATCAGGTATAACTGTAAAGGAGGAT GGAAATGGAGGGACACCACGAAGCCAAATCCAAATACACTTGTTGGAGCCATGGTTGCTGGTCCTGACAGGCATGATGGTTTCCGTGATGTTCGCACCAA CTACAATTATACAGAGCCAACGATTGCTGGAAATGCTGGATTAGTTGCAGCACTTGTGGCGTTGTCAGGTGACAAAACTACTGGGATTGATAAGAACACC ATATTCTCTGCAGTTCCCCCAATGTTTCCAACTCCGCCGCCACCTCCAGCACCTTGGAGACCATGA
AA sequence Show only first row Show all	>Potri.001G078900.1 pacid=42789460 polypeptide=Potri.001G078900.1.p locus=Potri.001G078900 ID=Potri.001G078900.1.v4.1 annot-version=v4.1 MSMYGRDPWGGSLEINAADSATDDDRSRNLNDLDRAALSRPLDETQQSWLLGPAEQKKKKKYVDLGCIIVSRKIFVWTVGSIVAAALLVGLITVIVEAVP RHRHNHTPADNYTLALHKALMFFNAQKSGKLPKHNNVSWRGSSCLSDGKGKQGSFYKDLVGGYYDAGDAIKFHFPASFAMTMLSWSVIEYSAKYEATGEL NHVKEIIKWGADYFLKTFNSSSDTINTMVAQVGTGDTSGGSTTPNDHYCWMRPEDIDYERLVTECSHCSDLAAEMAAALASASIVFKDNKAYSQKLVHGA RTLFQFARDQRGRYSERGSEAAIFYNSTSYWDEFVWGGAWLYYATGNNSYLQLATNPGIAKHAGAFWGGPDYGVLSWDNKLAGTQLLLSRLRLFLSPGYP YEEILRTFHNQTSIIMCSYLPIFTKFNRTRGGLIELNHGRPQPLQYVVNAAFLATLYSDYLEAADTPGWYCGPNFYSTDVLRDFAKTQIDYILGKNPRKM SYVVGFGNHYPKHVHHRGASIPKNKIRYNCKGGWKWRDTTKPNPNTLVGAMVAGPDRHDGFRDVRTNYNYTEPTIAGNAGLVAALVALSGDKTTGIDKNT IFSAVPPMFPTPPPPPAPWRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.001G078900 [exp]	0	1	KOR1.2
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.016G107300 [exp]	2.44	0.9579
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145832 [exp]	3.87	0.9508
AT3G16200			unknown protein		Potri.001G186200 [exp]	4.00	0.9216
AT1G20760			Calcium-binding EF hand family...		Potri.002G008300 [exp]	4.47	0.9294
AT1G13730			Nuclear transport factor 2 (NT...		Potri.010G157800 [exp]	5.47	0.9343
AT1G63300			Myosin heavy chain-related pro...		Potri.001G106700 [exp]	5.83	0.9060
AT5G26910			unknown protein		Potri.013G010500 [exp]	6.70	0.9015
AT2G20840			Secretory carrier membrane pro...		Potri.019G104000 [exp]	9.38	0.9267
AT5G54240			Protein of unknown function (D...		Potri.001G408001 [exp]	9.94	0.9297
					Potri.001G297466 [exp]	10.24	0.9224

Compare expression of checked genes

Potri.001G078900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.