Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49730 886 / 0 ATFRO6, FRO6 ferric reduction oxidase 6 (.1) AT5G49740 883 / 0 ATFRO7, FRO7 ferric reduction oxidase 7 (.1) AT1G01590 331 / 4e-103 ATFRO1, FRO1 ferric reduction oxidase 1 (.1) AT5G23980 325 / 7e-101 FRO2, ATFRO4, FRO4 ferric reduction oxidase 4 (.1) AT1G01580 325 / 1e-100 FRD1, ATFRO2, FRO2 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) AT1G23020 307 / 7e-94 ATFRO3, FRO3 ferric reduction oxidase 3 (.1.2) AT5G23990 301 / 5e-92 ATFRO5, FRO5 ferric reduction oxidase 5 (.1) AT5G50160 263 / 2e-77 ATFRO8, FRO8 ferric reduction oxidase 8 (.1) AT1G19230 110 / 1e-24 Riboflavin synthase-like superfamily protein (.1.2) AT4G25090 108 / 6e-24 Riboflavin synthase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142800 [exp] 322 / 1e-99 AT5G23980 894 / 0.0 ferric reduction oxidase 4 (.1) Potri.004G079200 [exp] 318 / 2e-98 AT5G23980 870 / 0.0 ferric reduction oxidase 4 (.1) Potri.014G088000 [exp] 316 / 4e-97 AT1G01580 762 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142700 [exp] 314 / 2e-96 AT1G01580 677 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.004G079100 [exp] 305 / 5e-93 AT1G01580 692 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.015G083200 [exp] 276 / 3e-82 AT5G50160 650 / 0.0 ferric reduction oxidase 8 (.1) Potri.012G084800 [exp] 271 / 4e-80 AT5G50160 657 / 0.0 ferric reduction oxidase 8 (.1) Potri.006G137300 [exp] 105 / 4e-23 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.003G133300 [exp] 103 / 2e-22 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007586 [exp] 862 / 0 AT5G49740 867 / 0.0 ferric reduction oxidase 7 (.1) Lus10012161 [exp] 738 / 0 AT5G49740 723 / 0.0 ferric reduction oxidase 7 (.1) Lus10039268 [exp] 333 / 2e-103 AT1G01580 722 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036379 [exp] 307 / 9e-94 AT1G01580 691 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10014957 [exp] 282 / 1e-84 AT5G23980 665 / 0.0 ferric reduction oxidase 4 (.1) Lus10036381 [exp] 274 / 4e-81 AT1G01580 701 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10019488 [exp] 264 / 2e-77 AT5G50160 691 / 0.0 ferric reduction oxidase 8 (.1) Lus10027507 [exp] 209 / 2e-56 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10012160 [exp] 115 / 6e-29 AT5G49740 130 / 8e-35 ferric reduction oxidase 7 (.1) Lus10043339 [exp] 110 / 6e-25 AT3G48190 321 / 5e-96 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF01794 [poplar] [flax] Ferric_reduct Ferric reductase like transmembrane component CL0076 [poplar] [flax] FAD_Lum_binding PF08022 [poplar] [flax] FAD_binding_8 FAD-binding domain CL0091 [poplar] [flax] NAD_Ferredoxin PF08030 [poplar] [flax] NAD_binding_6 Ferric reductase NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G079000.1 pacid=42788187 polypeptide=Potri.001G079000.1.p locus=Potri.001G079000 ID=Potri.001G079000.1.v4.1 annot-version=v4.1 ATGGATGGAAACTCTGTTCAGGAACCTCTTCTTTTGAGTGAAATAAGTGTCAAGAAAACATCTCTCTTTGTTTCATCAGTGAAATGGATTCTCAAGATTC TAATGTGGGCTATTTTTGTTGCATGGATTGGGGTTATCTTTCTCTTCCCAACACAGTTTGGTAATGGATTGCTTGAGAAATACATTCATGCCACCAATGG AAATCCTTGCGGTATTACAGGAAGCTTATTCCTTGTATTAAGTGGACCGGTTCTTGTTATTGCCTTTCTTTCCATATTTCATCTTATCATATCTGGTGAC GAGGAGTTCCAGCAGAAGAAGAGTTCGAAACACCCAGGCGTCCGCTTATGGACATTCCCTTTTCTTGTGGATGGACCATTCGGGGTTGTTTCTGCTGCTG AGTTTATTGGCATTCTACTCTTTGTTGTGTATGTTATCTGGGCCTTGTATGCTTATATAATCCAGAGTCTCAACCGTATATCTGGGGAGGATTTGACCCT TATGGAGGAAAGTATTCTGTTCTTGAAAATGATGGGAGGTCATCTTGGTTCAATGGGATTATATTGCATGGCATTTTTGTTTCTTCCTGTTGCAAGAGGA TCAGTTCTTCTCCGTTTTATCAATATCCCATTTGAGCATGCCACGAGATACCATGTATGGCTGGGGCACCTGACAATGGTGCTGTTTACTCTCCATGGGC TATTGTACGTAGTTGGATGGGCAATGGAGGGCAACCTCCTGCATAAACTATTATCATGGAAAGATATTGGTGTTGCTATTCTTCCTGGAGTTATCAGCCT TGTCGCTGGTCTATTGATGTGGGTGACATCACTTCCTCCTGTTCGGAAGTGGAATTTTGAATTGTTCTTTTACACCCATCAACTATACGTGGTCTTTGTT CTCGGCTTGGCATTGCATGTTGGTGACTTTATTTTTAGTATGGCTGCTGGTGGAATATTTCTTTTCATGCTTGATCGATTTCTGAGATTATGCCAATCAC GAAGGACTGTTGATATAATTTCAGCCAAGAGCCTTCCATGTGGAACTGTGGAATTGGTCCTTTCAAAACCTGGAAATCTGCGGTACAATGCCCTCAGTTT TGTATTCCTTCAAATTCGGGAATTATCTTGGCTGCAATGGCATCCTTTCAGTGTTTCATCTAGTCCCTTGGATGGTAAATATCATTTGTCAATTCTTATA AAAGTTCTTGGGGAGTGGACAGCTAGGCTCAGAGGAAGTATCATGAACATATCCGAGGCTGAACAACCAGCTTCCCCTTCCCAACCTCGTCCTAAGATAA CAGCTTCTGTTGAGGGGCCATACGGGCATGAAGCGCCATACCACTTGATGTATGAAAACCTTATTTTGGTAGCAGGTGGCATAGGGATTTCACCTTTCCT AGCGATTTTGAGTGATATTCTCCACCGTGTTAATGAAGGGAGACCCTGCTTGCCACGGAATATTTTGATTGTTTGGGCTGTGAAAAGATCAAATGAACTT CCTCTTCTCTCGACGATGGACCTGGAATCAATTTGTCCATATTTCTATGACAAATTAAATCTTGAGATTTCCATCTATGTTACTCGAGAGTCAGATCCTC CATTGGAGGAGGGTGATATTCATAATGTTACAGTTTCTTCTGTTTGCCCCATGTCAAAGGGCTGTGGCATGTCGGTTTTGGTTGGTACAGGTGACAGTAT ATGGTCTGGCCTGTACGTCATCTCGTCTACAGTGGGCTTTGTTATTTCGCTGGGTATTTTGTATATATTTTACATAAATCCTTGTAGCATATCAACTTGG TGGTACAAAGGACTCCTTTTTTTCGGATGTATGCTTGCAAGTGTTGTTATCTTTGGGGGTCTTGTGGTTGGTTTATGGCATCTTTGGGAAAAGAAGATTT CTGCCAGGGAAGAATACGAGGAAAATAGGCTAAAGCCTGGCATGGTTCAGCATAATGAAGATGCGGTGAATTTGTTTCAGAAAAACCATACTAGTATAAC CACTATTCAGTATGGTTCAAGACCAGACTTCAAAGAAATATTCGGATCCATATCGGAGCACTGGGGTTATGCAGATGTGGGTGTCATCATATGCGGTCCT CCAACTCTTGAGACCAGTGTTGCTAGAGAAATCAGGTCTCGGAATTTAAAGAGAGAATCCCACCATCCAGTCTTCCATTTCCACAGTCATGCTTTTGATT TGTAG
AA sequence Show only first row Show all	>Potri.001G079000.1 pacid=42788187 polypeptide=Potri.001G079000.1.p locus=Potri.001G079000 ID=Potri.001G079000.1.v4.1 annot-version=v4.1 MDGNSVQEPLLLSEISVKKTSLFVSSVKWILKILMWAIFVAWIGVIFLFPTQFGNGLLEKYIHATNGNPCGITGSLFLVLSGPVLVIAFLSIFHLIISGD EEFQQKKSSKHPGVRLWTFPFLVDGPFGVVSAAEFIGILLFVVYVIWALYAYIIQSLNRISGEDLTLMEESILFLKMMGGHLGSMGLYCMAFLFLPVARG SVLLRFINIPFEHATRYHVWLGHLTMVLFTLHGLLYVVGWAMEGNLLHKLLSWKDIGVAILPGVISLVAGLLMWVTSLPPVRKWNFELFFYTHQLYVVFV LGLALHVGDFIFSMAAGGIFLFMLDRFLRLCQSRRTVDIISAKSLPCGTVELVLSKPGNLRYNALSFVFLQIRELSWLQWHPFSVSSSPLDGKYHLSILI KVLGEWTARLRGSIMNISEAEQPASPSQPRPKITASVEGPYGHEAPYHLMYENLILVAGGIGISPFLAILSDILHRVNEGRPCLPRNILIVWAVKRSNEL PLLSTMDLESICPYFYDKLNLEISIYVTRESDPPLEEGDIHNVTVSSVCPMSKGCGMSVLVGTGDSIWSGLYVISSTVGFVISLGILYIFYINPCSISTW WYKGLLFFGCMLASVVIFGGLVVGLWHLWEKKISAREEYEENRLKPGMVQHNEDAVNLFQKNHTSITTIQYGSRPDFKEIFGSISEHWGYADVGVIICGP PTLETSVAREIRSRNLKRESHHPVFHFHSHAFDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49730		ATFRO6, FRO6	ferric reduction oxidase 6 (.1...		Potri.001G079000 [exp]	0	1
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.018G015700 [exp]	1.41	0.9820
AT2G21320	CO		B-box zinc finger family prote...		Potri.005G117100 [exp]	1.41	0.9749
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007700 [exp]	4.24	0.9687
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Potri.005G237300 [exp]	5.29	0.9578
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Potri.013G109000 [exp]	5.65	0.9665
AT1G75100		JAC1	J-domain protein required for ...		Potri.002G134300 [exp]	6.32	0.9523
AT4G01650			Polyketide cyclase / dehydrase...		Potri.002G185100 [exp]	6.85	0.9133
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.005G255500 [exp]	7.74	0.9617
AT2G04039			unknown protein		Potri.014G172800 [exp]	9.16	0.9579
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.009G053300 [exp]	9.48	0.9553

Compare expression of checked genes

Potri.001G079000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.