Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07590 798 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151400 [exp] 917 / 0 AT5G07590 818 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 44 / 0.0002 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042992 [exp] 840 / 0 AT5G07590 824 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032495 [exp] 828 / 0 AT5G07590 812 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 49 / 6e-06 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 48 / 1e-05 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G079100.1 pacid=42788415 polypeptide=Potri.001G079100.1.p locus=Potri.001G079100 ID=Potri.001G079100.1.v4.1 annot-version=v4.1 ATGGAGTTTACTGAAGCTTATAAGCAGACGGGTCCTTGTTGTTTCTCTCCAAACTCCCGTTACATCGCTGTTGCTGTCGATTACCGTCTCGTGATTCGTG ATACGCTCTCTTTTAAGGTTGTGCAGTTGTTTTCATGCTTGGATAAGATAAGCTATATAGAATGGGCAAATGATTCTGAGTACATCCTTTGCGGTCTGAA TAAAAGACCGATGATACAAGCATGGTCATTGACTCAACCTGAGTGGACATGCAAAATAGATGAAGGTCCTGCTGGTATTGCATATTCTAGATGGAGTCCT GACAGCCGGCATATACTTACCACTTCAGATTTTCAGTTGAGGTTAACAGTTTGGTCGCTTTTGAACACAGCATGTGTTCATGTCCAGGGGCCAAAGCATT GCTCTAAAGGGGTTTCTTTCACTAAAGATGGGAAATATGCTGCAATTTGTACGAGGCGTGATTGCAAGGATTATGTAAATCTACTGTCATGTCATACATG GGAAATAATGGGTGCGTTTGCTGTTGATACATTGGACTTAGCTGATATAGAGTGGTCGCCGGATGATAGTGCTATAGTAATATGGGATGCACCACTTGAA TTCAAGGTTCTAATTTACTCCCCAGATGGGAGATGCCTATCCAAGTATCAAGCATATGAAAGTGGACTGGGTGTAAAAAGTGTTTCGTGGTCGCCTTGTG GCCAATATCTAGCTGTGGGTAGTTATGATCAGATGTTGCGAGTTTTGAATCACTTAACTTGGAAAACATTTGCTGAATTCATGCACCTATCCACTGTCCG TGGTCCTTGTTGTGCTGCTGTTTTCAAGGAGGTAGACGAGCCATTGCACCTCAATATGTCTGAGTTATGCTTGAGTGATGAGTTTCTCCAAGGAAATTCT GATGTTTCAGAAGGACACTTCAGAGTCATGTACGATGTTACTGAAGTACCTATTAGCTTGCCTTTCCAGAAGCCTCCTGCAGACAAACCGAATCCTAAAC AAGGCATCGGTCTTATGTCATGGAGTAAAGACAGCCGATATATTTATACACGTAATGATAGCATGCCAACTGCTCTGTGGATATGGGATATACGCCATCT AGAGCTTGCTGCCATCTTGGTGCAGAAGGATCCCATACGAGCAGCAGCATGGGACCCAACATGCACACGTCTTGTTCTCTGTACTGGCAGCTCTCACTTG TATATGTGGACCCCATCAGGTGCTTACTGCGTGAGTAATCCTCTACCACAGTTTAACATAACTGATTTGAAATGGAATTCAGATGGAAGTTGCCTCCTCC TCAAAGACAAGGAGTCGTTCTGCTGGGCGTCTGTGCCCTTATTTCCAGAATCTAGTGAATATAGTTCAGATGACTGA
AA sequence Show only first row Show all	>Potri.001G079100.1 pacid=42788415 polypeptide=Potri.001G079100.1.p locus=Potri.001G079100 ID=Potri.001G079100.1.v4.1 annot-version=v4.1 MEFTEAYKQTGPCCFSPNSRYIAVAVDYRLVIRDTLSFKVVQLFSCLDKISYIEWANDSEYILCGLNKRPMIQAWSLTQPEWTCKIDEGPAGIAYSRWSP DSRHILTTSDFQLRLTVWSLLNTACVHVQGPKHCSKGVSFTKDGKYAAICTRRDCKDYVNLLSCHTWEIMGAFAVDTLDLADIEWSPDDSAIVIWDAPLE FKVLIYSPDGRCLSKYQAYESGLGVKSVSWSPCGQYLAVGSYDQMLRVLNHLTWKTFAEFMHLSTVRGPCCAAVFKEVDEPLHLNMSELCLSDEFLQGNS DVSEGHFRVMYDVTEVPISLPFQKPPADKPNPKQGIGLMSWSKDSRYIYTRNDSMPTALWIWDIRHLELAAILVQKDPIRAAAWDPTCTRLVLCTGSSHL YMWTPSGAYCVSNPLPQFNITDLKWNSDGSCLLLKDKESFCWASVPLFPESSEYSSDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07590			Transducin/WD40 repeat-like su...		Potri.001G079100 [exp]	0	1
AT5G14430			S-adenosyl-L-methionine-depend...		Potri.001G342300 [exp]	8.12	0.8507
AT2G33640			DHHC-type zinc finger family p...		Potri.005G254432 [exp]	11.61	0.8312
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Potri.007G000300 [exp]	18.33	0.7951
AT1G77620			P-loop containing nucleoside t...		Potri.005G177000 [exp]	20.78	0.7940
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.002G158400 [exp]	30.72	0.8223
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	35.98	0.8166
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.008G137801 [exp]	38.57	0.7746
AT3G53320			unknown protein		Potri.006G131650 [exp]	40.09	0.8164
AT1G14710			hydroxyproline-rich glycoprote...		Potri.010G102100 [exp]	40.21	0.8055
AT3G14410			Nucleotide/sugar transporter f...		Potri.001G394500 [exp]	41.78	0.7960

Compare expression of checked genes

Potri.001G079100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.