Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44900 1056 / 0 ARABIDILLO-1, ARABIDILLO1 F-box Armadillo protein 1, ARABIDILLO-1 (.1) AT3G60350 1010 / 0 ARABIDILLO-2, ARABIDILLO2 F-box Armadillo protein 2, ARABIDILLO-2 (.1) AT2G23140 71 / 2e-12 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G23030 68 / 2e-11 PUB11 ARM repeat superfamily protein (.1) AT3G46510 68 / 2e-11 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G71020 63 / 5e-10 ARM repeat superfamily protein (.1.2) AT5G67340 62 / 2e-09 ARM repeat superfamily protein (.1) AT3G01400 60 / 3e-09 ARM repeat superfamily protein (.1) AT5G42340 61 / 4e-09 PUB15 Plant U-Box 15 (.1) AT5G62560 61 / 4e-09 PUB41 RING/U-box superfamily protein with ARM repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046000 [exp] 1104 / 0 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.002G137100 [exp] 1074 / 0 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.009G165900 [exp] 77 / 2e-14 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.007G051000 [exp] 70 / 7e-12 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.004G205000 [exp] 69 / 1e-11 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.009G029600 [exp] 68 / 2e-11 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G009900 [exp] 67 / 4e-11 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.005G144700 [exp] 67 / 4e-11 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.010G226500 [exp] 66 / 9e-11 AT3G54850 806 / 0.0 plant U-box 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042900 [exp] 915 / 0 AT2G44900 1321 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10028197 [exp] 821 / 0 AT2G44900 1144 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10028198 [exp] 170 / 7e-49 AT2G44900 243 / 4e-76 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10007738 [exp] 68 / 1e-11 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10019308 [exp] 66 / 1e-10 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 66 / 1e-10 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10016565 [exp] 66 / 1e-10 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10018684 [exp] 63 / 2e-10 AT3G01400 358 / 2e-124 ARM repeat superfamily protein (.1) Lus10040834 [exp] 64 / 3e-10 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10012260 [exp] 64 / 3e-10 AT5G42340 695 / 0.0 Plant U-Box 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.001G079300.1 pacid=42787676 polypeptide=Potri.001G079300.1.p locus=Potri.001G079300 ID=Potri.001G079300.1.v4.1 annot-version=v4.1 ATGACTCGAAGGGTGAGGAGAAAGTTGGCACACTCCAAGGAAAAAAATAAGGAGATTGTAGGCAGTAATTCAGAGAATCAGGATGATGGATGTTTGCGCT CCAGTACCATTTGTGACCTTGATTGGATGGCATTGCCTGATGACACAGCTATTCAGCTATTTTCTTATTTAAATTATCGAGACCGGGCCAGTTTGTCGGC AACATGTCGAACATTTAGACTGTTAGGTTCCTCTCCTTGTTTATGGGATTCTCTAGACCTTCGGTACCACAAGTTTGATATTGCAGCAGCACAGTCGCTG TCTTCTCGATCCAAAAATCTTCGGAAGCTTCGGTTTCTAGGGGCAGAGTCCGCAGATGCTATTATTAGTCTTGAAGCGAGGGAACTTCGTGAAATTAGTG GTGATTTCTGTCGGGATATCACAGATGCTACACTTTCAATGATAGCAGCTCGACATGAGATGCTTGAGTGTCTCCAACTTGGGCCAGATGTGTGTGAAAG AATCACCAGCTTTGCAATCAGAGTAATAGCACTTTGCTGCCCCAAGTTAAAGAGACTTCAGATTTCAGGTGTTAAGGAAGTTACTGGAGAAGCCATAAAT GCTTTAGCTAAGCATTGTAGGCAATTGGTGGAGGTTGCATTCATGGAATCCAATTCTGTTGATGAACTCGCATTAGGAAACCTGACTTCTGTCCAATTTT TGTCACTGGCTGGAACAAAAAACCTGAAATGGAATTCAGCTTCATGTGTTTGGAGTAAATTGCCCAAGTTGGTGGGGTTAGATGTGTCAAGGACAGATAT AACTTTCAGCTCTGTCATGAGATTGTTTTTGTCATCCCAATACTTGAAAGTGTTGGTGGCCTTGAACTGTCCAGTTTTTGAAGCTGAAGTTGATAATCAC ATGACATATAATCATAAGGGAAAAATATTACTCACAGTTTTCAATGACATTTTCAAGGCAGTAGGCTCGTTATTTGTCGATATTACTGAAAATGAGAGCA ACAACTTATCTTATTGGAGGAAAGTAAAGAGCATCGACAGAAGCATGGATGTCATTGCTACTTGGATTGAATGGATTTTCTCACATTTTCTTTTACGTAT CGCGGAGAACAACCCCAAGGAGCTTGATGCTTTCTGGATCAAGCAAGGAGCAGCTCTGTTGCTTGATTTATTGCAAAGCTCACAAGAAGATGTTCAAGAA AGAGCAGCCAATTCAATTGCTACTTTTGTTGTGATTGACGATGAAAATGCCACTGTTGATTCTCAAAGAGCTGAGGTAGTTATGCAGAATGGTGGAATAC AGCTGCTTTTGGACCTTGCTAGATCTTGCCGAGAAGGACTTCAGTCTGAAGCAGCAAAGGCTATAGCAAATTTGTCTGTAGATTCAAAAGTTGCAAAAGC TGTTGCTGACATTGGAGGAATTAATATCCTTGTCGGTTTGGCTAGGTCAGTAAACAGATTGGTTGCTGAAGAGGCTGCTGGAGGCCTATGGAATCTTTCC GTTGGAGAAGAGCATAAGGGTGCCATTGCTGAGGCTGGCGGTATAAAAGTTTTGATTGACCTTATTTATAAATGGCACGCTGGCAATGATGGGGTACTTG AACGAGCAGCTGGAGCACTGGCAAATTTGGCAGCTGATGACAGCTGTAGCATGGAAGTGGCAGTGGCAGGCGGTGTCCATGCTCTTGTAATGCTTGCTAG ATCCTGCAAGTTTGAAGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCCAATCTAGCTGCTCATGGAGATAACAATAATGACAATGCTGCTGTTAGGCGA GAGGCAGGAGCACTTGAAGCATTGGTCCAACTCACTTCTTCCCAGCATGAAGGTGTAAGGCAAGAAGCTGCTGGTGCTCTGTGGAATTTATCATTTGATG ACAAAAATAGAGAAGCAATAGCGGCAGCTGGTGGCATCACAGCCTTGGTTTCTCTAGCACAATCATGTTCAAATTCCTCCCAAAGTCTTCAAGAAAGGGC TGCGGGTGCTCTTTGGGGATTGTCAGTATCAGAAGCCAACAGTATTGCTATTGGGCAAGAAGGCGGTGTAGCTCCACTAATTGTACTGGCTTGCTCAGAT ATTGCAGATGTCCATGAGACTGCTGCAGGTGCTCTTTGGAATCTGGCTTTTTATCCCACCAATGCTCTTCGCATAGTAGAGGGTGGAGGAGTCCCAGCCC TCATTCATCTGTGTTCTTCATCGGTATCAAAAATGGCACGTCTAATGGCTGCATTGGCTCTGGCATACGTGTTTGATCAGAGAACGGAAGAATTTGCACC AGGGGGGCCTTTATCAGAGGGAACCTCAAAGACCATGAACTTTGACGAGATTAAAAGGGTGGCCCTGAAGAAAATTGAAGCATTTGTGCTTTCTTTCTCT GTTCCACAAAATTTTGCTGCTGCAATGGTGTCATCCGCCCCCAAAGCCCTTGGACAAGTAGCAGAAGCAGTACGTATACCAGAAGCAGGGCATCTGAGAT GCAGTGCAGCTGAGATTGGAAGATTTGTTGCTATGTTGCGGAATCCTTCTTCTATACTCAAGGCTTGTTCTGCCTTTGCTCTTCTCCAGTTTACAATCCC GGGAGGACGACATACATTGCATCACACAAGCCTGTTGCAAAATGCAGGAGCACCAAGAGTCTTACGCGCTGCTGCAGCAGCAACTACGGCCCCAATTGAA GCCAAAGTTTTTGCAAAAATCATACTTCGCAATCTTGAACACCACCATTTGGAAGCTTTAAATTAG
AA sequence Show only first row Show all	>Potri.001G079300.1 pacid=42787676 polypeptide=Potri.001G079300.1.p locus=Potri.001G079300 ID=Potri.001G079300.1.v4.1 annot-version=v4.1 MTRRVRRKLAHSKEKNKEIVGSNSENQDDGCLRSSTICDLDWMALPDDTAIQLFSYLNYRDRASLSATCRTFRLLGSSPCLWDSLDLRYHKFDIAAAQSL SSRSKNLRKLRFLGAESADAIISLEARELREISGDFCRDITDATLSMIAARHEMLECLQLGPDVCERITSFAIRVIALCCPKLKRLQISGVKEVTGEAIN ALAKHCRQLVEVAFMESNSVDELALGNLTSVQFLSLAGTKNLKWNSASCVWSKLPKLVGLDVSRTDITFSSVMRLFLSSQYLKVLVALNCPVFEAEVDNH MTYNHKGKILLTVFNDIFKAVGSLFVDITENESNNLSYWRKVKSIDRSMDVIATWIEWIFSHFLLRIAENNPKELDAFWIKQGAALLLDLLQSSQEDVQE RAANSIATFVVIDDENATVDSQRAEVVMQNGGIQLLLDLARSCREGLQSEAAKAIANLSVDSKVAKAVADIGGINILVGLARSVNRLVAEEAAGGLWNLS VGEEHKGAIAEAGGIKVLIDLIYKWHAGNDGVLERAAGALANLAADDSCSMEVAVAGGVHALVMLARSCKFEGVQEQAARALANLAAHGDNNNDNAAVRR EAGALEALVQLTSSQHEGVRQEAAGALWNLSFDDKNREAIAAAGGITALVSLAQSCSNSSQSLQERAAGALWGLSVSEANSIAIGQEGGVAPLIVLACSD IADVHETAAGALWNLAFYPTNALRIVEGGGVPALIHLCSSSVSKMARLMAALALAYVFDQRTEEFAPGGPLSEGTSKTMNFDEIKRVALKKIEAFVLSFS VPQNFAAAMVSSAPKALGQVAEAVRIPEAGHLRCSAAEIGRFVAMLRNPSSILKACSAFALLQFTIPGGRHTLHHTSLLQNAGAPRVLRAAAAATTAPIE AKVFAKIILRNLEHHHLEALN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Potri.001G079300 [exp]	0	1
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Potri.009G021000 [exp]	1.00	0.7817	CIPK3.2
AT1G06230		GTE4	global transcription factor gr...		Potri.011G096400 [exp]	10.00	0.7368
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.005G225300 [exp]	11.61	0.7718
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Potri.004G018100 [exp]	16.06	0.7155	TOM1.2
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.011G133100 [exp]	16.18	0.7804
AT1G61850			phospholipases;galactolipases ...		Potri.011G000200 [exp]	16.24	0.7653
AT2G42450			alpha/beta-Hydrolases superfam...		Potri.002G041000 [exp]	17.54	0.7561
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Potri.015G041500 [exp]	18.76	0.7694
AT5G64320			Pentatricopeptide repeat (PPR)...		Potri.006G015900 [exp]	36.37	0.7340
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Potri.006G039800 [exp]	38.23	0.6918

Compare expression of checked genes

Potri.001G079300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.