Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51180 529 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G25770 370 / 1e-126 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G10040 329 / 7e-111 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G29120 273 / 3e-88 Hydrolase-like protein family (.1.2.3.4.5) AT1G09980 51 / 1e-06 Putative serine esterase family protein (.1.2) AT1G58350 48 / 1e-05 ZW18 Putative serine esterase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151300 [exp] 650 / 0 AT5G51180 541 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G096035 [exp] 357 / 7e-122 AT4G25770 502 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G113000 [exp] 315 / 3e-105 AT1G10040 471 / 2e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G065700 [exp] 263 / 2e-84 AT1G29120 580 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Potri.019G077700 [exp] 49 / 4e-06 AT1G58350 1036 / 0.0 Putative serine esterase family protein (.1.2.3) Potri.013G104400 [exp] 45 / 6e-05 AT1G58350 1027 / 0.0 Putative serine esterase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032496 [exp] 581 / 0 AT5G51180 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042993 [exp] 559 / 0 AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10006982 [exp] 320 / 5e-107 AT4G25770 432 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001320 [exp] 301 / 1e-100 AT4G25770 436 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001893 [exp] 259 / 5e-83 AT1G29120 558 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10013909 [exp] 253 / 1e-80 AT1G29120 561 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10038351 [exp] 44 / 0.0001 AT1G09980 1025 / 0.0 Putative serine esterase family protein (.1.2) Lus10036214 [exp] 42 / 0.0004 AT1G58350 640 / 0.0 Putative serine esterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05057 [poplar] [flax] DUF676 Putative serine esterase (DUF676)
Representative CDS sequence Show only first row Show all	>Potri.001G079400.4 pacid=42793127 polypeptide=Potri.001G079400.4.p locus=Potri.001G079400 ID=Potri.001G079400.4.v4.1 annot-version=v4.1 ATGGAGAACAGAGTTTGTTCAACAGAATCAGTAAATGGAAGCTGTGATGTCTGGAGTTGTCAAAAATCCGCTGCTGCTTCTGCTGATCATCTTGTCATTA TGGTCCACGGTATCCTTGGAAGTAACGCAGATTGGAAGTTTGGAGCAGAGCAGTTTGTTAGAACTTTACCTGATAAAGTATTTGTTCATTGTAGTGAAAA AAATATGTTTAGGCTGACACTTGATGGTGTTGATGTGATGGGTGAGCGGTTGGCTGAGGAGGTACTTGAGGTAATTCAAAGAAAGCAGAATTTGCGGAAG ATTTCATTTGTTGCACATTCTGTGGGAGGATTAGTGGCCAGATATGCAATTGGAAGATTGTATAGACCACCCAAGAAAGAAAATGTAGCAGATTCAACTG ATGGTACAAATGAAGACGACATAAAGGCTACAATAGGTGGCTTGGAGCCTATGAACTTTATCACGGTTGCTACACCTCACCTTGGTTCAAGAGGAAATAA GCAGGTTCCATTTCTTTTTGGTGTAACTGCCTTTGAGAAAGCAGCTCGCCTCTTGATTCATTGGATATTTAAGAGAACAGGTCGACACCTTTTTCTTACC GATGATGATGAGGGCAATGCTCCATTGCTTAAACGCATGATAGAAGATTATGGTGATTGTTTTTTCATGTCGGCATTGTGTATATTCAAACGCCGGGTGG CATATTCAAATGTGGGCTATGACCATATTGTGGGCTGGAGAACGTCGTCCATCAGGCGTAATTATGAATTGCCAAAGTGGGAAGATAATATGAACAAGGA ATATCCGCATATTGTATACGAAGAACGCTGTAAGGCCCGTGATGCCGAGCAGTCTGAACTTATTTCGACAGAAGATGATGGTTCGGACAAGCTAGAAGAG GAACTAGTGGCTGGTTTATCCCGTGTGTCATGGGAAAAAGTGGACGTTAGCTTCCATGCCAGCCGACAGAGGTTTGCTGCTCATAGTGTAATTCAGGTTA AAGATGAAATGATGCATATGGAAGGTGCAGATGTGATACGACATATGATTGATCATTTTCTTCTGTAA
AA sequence Show only first row Show all	>Potri.001G079400.4 pacid=42793127 polypeptide=Potri.001G079400.4.p locus=Potri.001G079400 ID=Potri.001G079400.4.v4.1 annot-version=v4.1 MENRVCSTESVNGSCDVWSCQKSAAASADHLVIMVHGILGSNADWKFGAEQFVRTLPDKVFVHCSEKNMFRLTLDGVDVMGERLAEEVLEVIQRKQNLRK ISFVAHSVGGLVARYAIGRLYRPPKKENVADSTDGTNEDDIKATIGGLEPMNFITVATPHLGSRGNKQVPFLFGVTAFEKAARLLIHWIFKRTGRHLFLT DDDEGNAPLLKRMIEDYGDCFFMSALCIFKRRVAYSNVGYDHIVGWRTSSIRRNYELPKWEDNMNKEYPHIVYEERCKARDAEQSELISTEDDGSDKLEE ELVAGLSRVSWEKVDVSFHASRQRFAAHSVIQVKDEMMHMEGADVIRHMIDHFLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51180			alpha/beta-Hydrolases superfam...		Potri.001G079400 [exp]	0	1
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.001G230604 [exp]	1.41	0.7881
AT3G14470			NB-ARC domain-containing disea...		Potri.006G273900 [exp]	4.00	0.7866
AT1G49180			protein kinase family protein ...		Potri.019G007200 [exp]	6.92	0.7770
					Potri.015G116300 [exp]	8.66	0.7784
AT4G19600		CYCT1;4	Cyclin family protein (.1)		Potri.008G150500 [exp]	13.22	0.7769
AT5G51180			alpha/beta-Hydrolases superfam...		Potri.003G151300 [exp]	13.41	0.7408
AT1G77000		ATSKP2;2, SKP2B	ARABIDOPSIS HOMOLOG OF HOMOLOG...		Potri.005G185700 [exp]	22.84	0.7696
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Potri.007G017000 [exp]	27.96	0.7463
AT3G10540			3-phosphoinositide-dependent p...		Potri.010G232800 [exp]	30.33	0.7329
AT3G21880	CO	COL12	B-box type zinc finger protein...		Potri.017G039301 [exp]	38.07	0.7540

Compare expression of checked genes

Potri.001G079400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.