Plant FIBer expression Database

VEF901,Pt-VRN2.5 (Potri.001G080200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol VEF901,Pt-VRN2.5
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51230 703 / 0 C2H2ZnF AtEMF2, CYR1, VEF2, EMF2 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3)
AT4G16845 263 / 4e-81 VRN2 REDUCED VERNALIZATION RESPONSE 2, VEFS-Box of polycomb protein (.1.2)
AT2G35670 128 / 1e-30 FIE2, FIS2 FERTILIZATION INDEPENDENT SEED 2, FERTILIZATION-INDEPENDENT ENDOSPERM 2, VEFS-Box of polycomb protein (.1)
AT4G16810 110 / 1e-26 VEFS-Box of polycomb protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G150450
[exp]
1063 / 0 AT5G51230 707 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3)
Potri.003G081400
[exp]
378 / 1e-125 AT4G16845 390 / 2e-133 REDUCED VERNALIZATION RESPONSE 2, VEFS-Box of polycomb protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032500
[exp]
776 / 0 AT5G51230 733 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3)
Lus10042997
[exp]
769 / 0 AT5G51230 717 / 0.0 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09733 VEFS-Box VEFS-Box of polycomb protein
Representative CDS sequence
>Potri.001G080200.7 pacid=42792219 polypeptide=Potri.001G080200.7.p locus=Potri.001G080200 ID=Potri.001G080200.7.v4.1 annot-version=v4.1
ATGCCGGGGATTCCTTTAGTCACTCGTGAAACTTCCTCGTATAGTCGAAGCACGATAGATCAGATGTGCCGTGAAGATGCACGTGGTGGTGGTGTTTTGC
ATTTAACTGAAGAAGAAGAAATTGCTGCCGAAGAAAGTCTTTCGATTTATTGCAAGCCTGTTGAGCTTTATAATATTCTTCAGCGTCGCTCGATTGGAAA
TCCGTCATTTTTGCAAAGATGTTTGCTGTATAAAATACAGGCCAAGAATAAAAGAAGAATACAAATGACGATTTCCATGCTTGTGACACTAAATGGAGTT
GTACAATCGCATAATATATTTCCCTTGTATGTTTTGTTGGCAAGGCTTGTATCCAACATTGGGGTTTTAGAGTATTCTGCAGTATATCGCTTTAGTCAAC
CATGTGTTTTGACCGGCTTTGCTGGAGTTGAGGGTAGTGCTCAAGTACAAGCGAATTTCGTTCTCCCGGAGATGAATAAGCTAGCATCAGAGGTCAAATC
TGGCTCACTGCATGTCTTGCTTGTCAGCTTTGCTGGGGCCCAAAGTTCTATGCATGGAATCGATTTAACCAAGGGTCATTTGGAAAATGTTGGAGGATGC
TGTCTATTGGGGAAGATACCATTAGACTCGCTATGTAATTTCTGGGAGAAGTCACCAAATTTGGGTTTGGGACAAAGAGCGGAGGTGACATCTCCTGTTG
ACATGAATGCTTGTTTCTTGAAGTTGAATTGTTTGACCGAGGACAACTGTGTTTTAATTCAAATTCCATTTAATTCTGAAACTGTGAATACATCACAGCT
GCAAGTCAACATTTCTGCAGAAGAGGTTGGAGCTAAGGAAAAATCTTCATACACATGTAGTGACATGTCTTCTTCATCTTCGTCTCATGTTATTCGGTTG
AGGGCGGGAAATGTCATTTTCAACTATAGATATTATAATAATAAGTTGCAAAAAACTGAAGTAACTGAAGACTTTTCCTGCCCATTTTGCTTGGTAAAAT
GTGCAAGCTTCAAGGGTCTGAGATATCACTTGCCCTCGTCACATGACCTCTTCGACTTTGAATTTTGGATAACTCAAGAATTTCAAGCTGTTAATATATC
TGTGAAAACTGATATTTGGAGATCCAAGACTGTTGCAGATGGTATTGATCCAAAACAACAGACCTTCTTTTGTTCAAAGAAACCAAAGCGCAAAAGACCC
AAGAACCTTATTCCAAATGCAAAGAATGCACATGACAAGACTCTGAGCAGGCAACGGGGAGCCGGTGAGCTTCTTGACAAGATTGGTGGTGGGAAGGATT
TGCCAACAACTAGCATGTGTGGCACAGAGTATGGCGAACACAATCTTTCCAGATTTTATGTTTCAGGGGTATCAGGGTCTGCAGCACAAGCATATCCTGA
TGCTGAATGTGTTCAAATGGTACCTGGAAATAATCTTGCACCCCCTGCCATGCTACAGTTCGCAAAGACTAGAAAATTATCAATTGAAAGGTCTGACATG
AGAAACCGTATGCTCCTTCACAAACGACAATTTTTTCACTCACATAGAGCTCAGTCAATGGAAATTGAGCAAGTTATGTCAGATCGGGATAGTGAGGATG
AAGTTGATGATGATGTTGCGGATTTTGAAGACCGAAGGATGCTTGATGATTTTGTAGATGTGACTAAAGATGAGAAGCAAATGATGCACTTATGGAACTC
ATTTGTGAGGAAGCAGCGGGTGCTTGCAGATGGACATATCCCATGGGCATGTGAGGCCTTCACAAGATTGCATGGACACGACCTTTTCCTAGCCCCAGCT
CTAATGTGGTGTTGGAGATTATTTATGATCAAACTGTGGAATCATGGTCTACTTGATGCACGTACGATGAACTTGTGTAATATGATTCTCGAACAATACC
AAAAGCAGGACTTGGATCCTATGAAAAACTAG
AA sequence
>Potri.001G080200.7 pacid=42792219 polypeptide=Potri.001G080200.7.p locus=Potri.001G080200 ID=Potri.001G080200.7.v4.1 annot-version=v4.1
MPGIPLVTRETSSYSRSTIDQMCREDARGGGVLHLTEEEEIAAEESLSIYCKPVELYNILQRRSIGNPSFLQRCLLYKIQAKNKRRIQMTISMLVTLNGV
VQSHNIFPLYVLLARLVSNIGVLEYSAVYRFSQPCVLTGFAGVEGSAQVQANFVLPEMNKLASEVKSGSLHVLLVSFAGAQSSMHGIDLTKGHLENVGGC
CLLGKIPLDSLCNFWEKSPNLGLGQRAEVTSPVDMNACFLKLNCLTEDNCVLIQIPFNSETVNTSQLQVNISAEEVGAKEKSSYTCSDMSSSSSSHVIRL
RAGNVIFNYRYYNNKLQKTEVTEDFSCPFCLVKCASFKGLRYHLPSSHDLFDFEFWITQEFQAVNISVKTDIWRSKTVADGIDPKQQTFFCSKKPKRKRP
KNLIPNAKNAHDKTLSRQRGAGELLDKIGGGKDLPTTSMCGTEYGEHNLSRFYVSGVSGSAAQAYPDAECVQMVPGNNLAPPAMLQFAKTRKLSIERSDM
RNRMLLHKRQFFHSHRAQSMEIEQVMSDRDSEDEVDDDVADFEDRRMLDDFVDVTKDEKQMMHLWNSFVRKQRVLADGHIPWACEAFTRLHGHDLFLAPA
LMWCWRLFMIKLWNHGLLDARTMNLCNMILEQYQKQDLDPMKN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G51230 C2H2ZnF AtEMF2, CYR1, V... CYTOKININ RESISTANT 1, EMBRYON... Potri.001G080200
[exp]
0 1 VEF901,Pt-VRN2.5
AT4G25500 ATRSP40, AT-SRP... ARABIDOPSIS THALIANA ARGININE/... Potri.014G076600
[exp]
2.23 0.8507
AT4G36690 ATU2AF65A U2 snRNP auxilliary factor, la... Potri.005G125500
[exp]
3.46 0.8569
AT3G19180 ATCDP1, ARC6H, ... A. THALIANA CHLOROPLAST DIVISI... Potri.015G028101
[exp]
12.08 0.8538
AT5G18420 unknown protein Potri.004G092400
[exp]
13.22 0.8158
AT1G17550 HAB2 homology to ABI2 (.1) Potri.001G198501
[exp]
14.93 0.7359
AT5G16610 unknown protein Potri.017G130400
[exp]
17.37 0.7564
AT1G50410 SNF2 domain-containing protein... Potri.014G005701
[exp]
18.54 0.8510
AT5G42620 metalloendopeptidases;zinc ion... Potri.002G133300
[exp]
26.72 0.8190
AT3G14610 CYP72A7 "cytochrome P450, family 72, s... Potri.005G126600
[exp]
26.72 0.8440
AT1G15200 protein-protein interaction re... Potri.001G208200
[exp]
27.12 0.8413

Potri.001G080200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.