Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02130 387 / 2e-139 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT5G47200 379 / 3e-136 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT4G17530 378 / 1e-135 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT3G11730 327 / 1e-115 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT5G59840 252 / 1e-85 Ras-related small GTP-binding family protein (.1) AT3G53610 248 / 5e-84 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT3G46060 248 / 6e-84 ARA3, Ara-3, AtRABE1c, AtRab8A RAB GTPase homolog 8A (.1.2.3) AT5G03520 239 / 2e-80 ATRAB-E1D, AtRab8C, AtRABE1d ARABIDOPSIS RAB HOMOLOG E1D, RAB GTPase homolog 8C (.1.2) AT3G09900 239 / 2e-80 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT1G07410 196 / 1e-63 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081800 [exp] 410 / 3e-148 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G152800 [exp] 402 / 2e-145 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.002G138400 [exp] 396 / 8e-143 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.014G049400 [exp] 389 / 3e-140 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.003G004000 [exp] 337 / 2e-119 AT3G11730 359 / 2e-128 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.004G226600 [exp] 335 / 1e-118 AT3G11730 364 / 4e-130 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.009G027900 [exp] 250 / 4e-85 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.008G051700 [exp] 250 / 8e-85 AT3G46060 329 / 7e-116 RAB GTPase homolog 8A (.1.2.3) Potri.010G208900 [exp] 249 / 2e-84 AT3G46060 349 / 5e-124 RAB GTPase homolog 8A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010999 [exp] 384 / 5e-138 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10000595 [exp] 382 / 2e-137 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10036442 [exp] 330 / 3e-116 AT3G11730 350 / 2e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10041117 [exp] 278 / 7e-95 AT3G11730 302 / 3e-104 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10037608 [exp] 259 / 4e-89 AT1G02130 255 / 1e-87 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Lus10005890 [exp] 247 / 1e-83 AT3G46060 396 / 2e-142 RAB GTPase homolog 8A (.1.2.3) Lus10005443 [exp] 244 / 1e-82 AT3G46060 394 / 2e-141 RAB GTPase homolog 8A (.1.2.3) Lus10007698 [exp] 228 / 4e-76 AT3G46060 378 / 1e-135 RAB GTPase homolog 8A (.1.2.3) Lus10024423 [exp] 224 / 4e-75 AT3G46060 376 / 7e-135 RAB GTPase homolog 8A (.1.2.3) Lus10023430 [exp] 226 / 6e-75 AT3G46060 364 / 3e-129 RAB GTPase homolog 8A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.001G080400.1 pacid=42788523 polypeptide=Potri.001G080400.1.p locus=Potri.001G080400 ID=Potri.001G080400.1.v4.1 annot-version=v4.1 ATGACACCTGAATATGATTATTTGTTTAAGCTTTTGCTAATTGGGGATTCTGGTGTTGGCAAATCATGTCTGCTTTTGAGATTTGCTGATGATTCCTATC TGGAAAGTTACATCAGCACAATTGGAGTTGACTTCAAAATTCGCACTGTGGAGCAAGATGGAAAAACCATTAAACTTCAAATTTGGGACACTGCAGGGCA AGAGCGGTTCAGGACAATCACTAGCAGCTACTACCGTGGGGCACATGGCATTATAATAGTTTATGACGTGACAGACCAAGAGAGTTTCAACAATGTTAAG CAATGGTTAAATGAAATTGATCGATATGCAAGTGAAAATGTTAATAAGCTTCTGGTTGGGAACAAGTCTGACCTCACTGCCAACAAAGTTGTTTCATATG AAACAGCTAAGGCATTTGCAGATGAAATTGGTATTCCCTTCATGGAAACAAGTGCAAAAAATGCCATCAATGTGGAGCAAGCCTTTATGGCCATGGCTGC TGACATCAAGAACAGGATGGCAAGTCAACCTGCAGCGAACAATGCGAGGCCACCCACCGTGCAGATACGTGGACAGCCTGTTAACCAGAACACTGGCTGC TGCTCTTCCTAG
AA sequence Show only first row Show all	>Potri.001G080400.1 pacid=42788523 polypeptide=Potri.001G080400.1.p locus=Potri.001G080400 ID=Potri.001G080400.1.v4.1 annot-version=v4.1 MTPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK QWLNEIDRYASENVNKLLVGNKSDLTANKVVSYETAKAFADEIGIPFMETSAKNAINVEQAFMAMAADIKNRMASQPAANNARPPTVQIRGQPVNQNTGC CSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G080400 [exp]	0	1
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Potri.001G315800 [exp]	1.41	0.9514
AT2G15240			UNC-50 family protein (.1)		Potri.009G095900 [exp]	2.00	0.9466
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.014G049400 [exp]	3.46	0.9353	RAB1.2
AT3G11780			MD-2-related lipid recognition...		Potri.006G201400 [exp]	3.87	0.9320
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.019G029200 [exp]	5.47	0.9441	VATE.1
AT5G25530			DNAJ heat shock family protein...		Potri.018G034600 [exp]	8.24	0.9031
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.012G073300 [exp]	10.81	0.9196	Pt-VFPP2.1
AT4G35410			Clathrin adaptor complex small...		Potri.014G079000 [exp]	11.53	0.9281	AP19.1
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Potri.003G202900 [exp]	12.96	0.8978	Pt-ABI8.1
AT2G23940			Protein of unknown function (D...		Potri.018G101100 [exp]	13.11	0.8976

Compare expression of checked genes

Potri.001G080400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.