Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43000 256 / 5e-85 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT3G12910 235 / 2e-76 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G39820 228 / 3e-73 NAC ANAC094 NAC domain containing protein 94 (.1) AT1G26870 212 / 9e-66 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G61110 174 / 2e-52 NAC ANAC025 NAC domain containing protein 25 (.1) AT2G02450 173 / 2e-51 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT3G04070 172 / 2e-51 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT5G63790 167 / 1e-49 NAC ANAC102 NAC domain containing protein 102 (.1) AT1G12260 169 / 2e-49 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT5G08790 164 / 6e-49 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G149700 [exp] 513 / 0 AT2G43000 245 / 2e-80 NAC domain containing protein 42 (.1) Potri.005G205400 [exp] 305 / 6e-104 AT2G43000 269 / 6e-90 NAC domain containing protein 42 (.1) Potri.002G057200 [exp] 301 / 2e-102 AT2G43000 282 / 4e-95 NAC domain containing protein 42 (.1) Potri.005G098000 [exp] 275 / 4e-92 AT3G12910 271 / 2e-90 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.007G066300 [exp] 273 / 3e-91 AT3G12910 269 / 2e-89 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.017G082000 [exp] 231 / 2e-73 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.004G126901 [exp] 229 / 1e-72 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.011G123500 [exp] 176 / 1e-52 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.001G404400 [exp] 176 / 2e-52 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038332 [exp] 257 / 4e-85 AT2G43000 231 / 1e-75 NAC domain containing protein 42 (.1) Lus10031189 [exp] 248 / 2e-80 AT3G12910 264 / 9e-87 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10036194 [exp] 245 / 2e-80 AT3G12910 224 / 1e-72 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10030478 [exp] 233 / 5e-74 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10031767 [exp] 224 / 5e-73 AT2G43000 236 / 3e-78 NAC domain containing protein 42 (.1) Lus10036749 [exp] 224 / 5e-70 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10037178 [exp] 222 / 4e-69 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10015367 [exp] 214 / 2e-67 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10007263 [exp] 211 / 5e-66 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10037156 [exp] 186 / 4e-57 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.001G080900.2 pacid=42791778 polypeptide=Potri.001G080900.2.p locus=Potri.001G080900 ID=Potri.001G080900.2.v4.1 annot-version=v4.1 ATGGAGTTGGATAGGTTGAGTGCTAGTTCAAAAGACGTTGAAGAAGATGATGACATCCTGCTCCCAGGGTTTCGATTCCATCCAACCGATGAAGAACTTG TAGGATTTTATCTTAAAAAGAAAGTAGAGAAGAAGCCTATCAGGATTGACCTCATCAAACACGTTGATGTCTACAAATATGAGCCATGGGATCTTCCAAA AGAAGCAAGTTGTAGTGCTGGAGAAAGGGAGTGGTACTTCTTCTGTAGAAGAGGAAGAAAGTACAAGAACAGCATCAGACCTAATAGGGTCACAAGATCT GGATTTTGGAAAGCTACAGGCATTGACAAGCCAATATATTCTGTTGGGAAAATCCATTACTGCATTGGCCTGAAAAAATCGTTAGTTTATTACCGAGGAA GTGCTGGAAAAGGCACGAAAACAGACTGGATGATGCACGAATTTCGCCTTCCTGCTTGTGAAAATACTGCTAGCCTCACCAATCCTGACGGCTGTGATAT TCACGAAGCTGAAGTTTGGACACTTTGTCGAATATTCCAGAGAGAAGCTCCCTTTAACAAAAAATACCTCTCTTCCAAACAACAGTGTGTTAGTACTGAT TCAAGTGCTAGCCCTTGTGAATCAGACAATCGTAGACATAACGATGAAAGCTTCGAAGTTTCAGCTAATAATAAGGTGATTGAAAGCCAAGCTACCACTG ATCATTTCTATGGAAATAATAACCAGTCGTTTGCAGCCCAGATGAGCTTAACGAGTCAAGTTCCGTTTACAACATCATATCTAAGCTTTTTGAATCAAAA TGGAGACCAACTTTTTGGAGATGAGAACTGGGATGAGCTTAGACCAATGGTTGAGTTTGCTCTTGATCCTTCAGAGATATATTGTATTAGATAA
AA sequence Show only first row Show all	>Potri.001G080900.2 pacid=42791778 polypeptide=Potri.001G080900.2.p locus=Potri.001G080900 ID=Potri.001G080900.2.v4.1 annot-version=v4.1 MELDRLSASSKDVEEDDDILLPGFRFHPTDEELVGFYLKKKVEKKPIRIDLIKHVDVYKYEPWDLPKEASCSAGEREWYFFCRRGRKYKNSIRPNRVTRS GFWKATGIDKPIYSVGKIHYCIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPACENTASLTNPDGCDIHEAEVWTLCRIFQREAPFNKKYLSSKQQCVSTD SSASPCESDNRRHNDESFEVSANNKVIESQATTDHFYGNNNQSFAAQMSLTSQVPFTTSYLSFLNQNGDQLFGDENWDELRPMVEFALDPSEIYCIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.001G080900 [exp]	0	1
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.005G215700 [exp]	2.23	0.9791
					Potri.002G247600 [exp]	3.16	0.9715
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211366 [exp]	3.46	0.9700
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.011G007800 [exp]	3.46	0.9755	Pt-WRKY42.1
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.016G003000 [exp]	4.00	0.9789
AT4G33050		EDA39	embryo sac development arrest ...		Potri.018G061901 [exp]	5.29	0.9693
AT5G51160			Ankyrin repeat family protein ...		Potri.006G223800 [exp]	9.21	0.9552
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.012G025700 [exp]	13.49	0.8839
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.016G076100 [exp]	13.96	0.9377
AT3G07600			Heavy metal transport/detoxifi...		Potri.014G171300 [exp]	14.00	0.9346

Compare expression of checked genes

Potri.001G080900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.