Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17500 1461 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1456 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1439 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1433 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 1241 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G27870 1240 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 1217 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 1214 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G59820 902 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT1G13210 764 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197500 [exp] 1462 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 1452 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 1253 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 1205 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 1199 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 1164 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 885 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 879 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 657 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006881 [exp] 1448 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 1443 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 1434 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 1369 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10019152 [exp] 1228 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 1222 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 1182 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1132 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 1038 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 902 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF16209 [poplar] [flax] PhoLip_ATPase_N Phospholipid-translocating ATPase N-terminal CL0137 [poplar] [flax] PF16212 [poplar] [flax] PhoLip_ATPase_C Phospholipid-translocating P-type ATPase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G081200.1 pacid=42791679 polypeptide=Potri.001G081200.1.p locus=Potri.001G081200 ID=Potri.001G081200.1.v4.1 annot-version=v4.1 ATGCACGGGTCATCTAGGAGAACAAAGGGGAAGGTAAGATGGAGCAAACTGTATTCATTTTCGTGCTTTCGACCACACACATCCGATCCTGATTCTGCTC AGGAGCTCATCGGTCAGCCAGGATTTTCTCGGGTGGTTTTCTGCAATGAACCTCAAGTGCACAAGAGAAAACCTTACAAGTACACGAACAACTCGGTATC CACAAAAAAGTACACTGCTGTCACTTTTCTACCCAAAGCACTTTTCGAGCAGTTCCGCAGAGTTGCCAATTTGTATTTTCTTTTGACAGCAGCGTTGTCC ATCACTTCTTTGGCTCCTGTTAAACCTGTAAGTTTGATTGCTCCGTTGGTATTTGTGGTGGGGATCAGCATGCTCAAAGAGGCTGTTGAGGATTGGTATC GGTTTTTGCAGGACTTGAATGTGAACACTCGAACAGTAAAGGCTCATGCAGGAAATGGCTTATTTGTGGATAAATTATGGAGAGAGATTTCTGTAGGAGA TGTTGTTAAGGTTAACAAGGATGAATACTTTTCGAGCGATCTTCTCTTGCTATCGTCCAGCTATGAAGATGGTGTTTGTTATGTGGAGACTATGAACCTT GATGGAGAAACGAATCTAAAAATCAAGAGATGTTTAGAGGTCACACTTGATTTGAATGAGGATGCAAAATTCAGTGAATTCAAAGCCACCACCCGTTGCG AGGATCCCAATCCAAGCCTTTACACCTTTGTGGGGAATTTAGAGTTTGAGAATAAAATATACCCCTTGAGCCCTTCTCAAATACTTTTAAGAGATTCAAA GCTTCGAAACACTGATTATGTTTATGGAGCTGTGATCTTTAGCGGGCATGATACGAAAGTAGTAAGGAATTCCACCATGTCACCATCTAAACGAAGCAGG CTTGAGAAAAAGATGGATAAAGTCATCTACCTTCTTTTCTCTATGCTTCTTCTGATCTCACTAGTGACTTCCATCGGGTCTGCTGTGGTCATAAAATCTG ATATGAGTCAATGGTGGTATCTTAGTTTGGAAGATTCTGATCCACTCTTCGATCCATCAAATCCTTTAAAATCAGGTTTTCTTCAGTTCATAAGGGCTCT AATATTGTATGGTTACTTGATTCCCATTTCTCTGTATGTCTCCATTGAAATTGTCAAGGTTCTACAAGCTAAGTTCATTAACAAGGATAAAAAAATGTAT GATGAAGCAACCTGTAAGTCTGTCCAGGCTCGAACTTCAAATTTGAATGAAGAACTTGGTCAAGTAGAAATCATTCTGTCAGATAAAACAGGAACTTTGA CTTGTAATCAGATGGAGTTTAGGAAATGCTCGATTGCTGGAATTTCGTATGGGGGTAACATAAATGAAGTTGATATTGCTGCTTCAAAGCGAATGAATAC TGACATTGAGGCATATCGATCTAGTATCGACCAATCTGATACAACAAGTCAGAGCCTTGAAATGTCTGAGTTTTCCGTGGCTGATATTATCACTCAAGAG GCTATTCTTAGGGGTCAAGAAAATGCAGATAATTTGAATGCTAGAAACTCAAGACTCTCTGATGTGAGGAAAGAATCAGTTATCAGGGTCATCAAGGGTT TCAACTTCAGGGATGACAGGTTAATGAACAACCAGTGGATTTACAGGTCTGACTTGTTTGATATGACAATGTTCTTCAGAGTCATGGCTCTATGTCACAC AGGTATACCCGTTGAAGATGGCCAAACTGACAAGCTTAAATATGAAGCAGAGTCCCCAGAAGAAGTTGCTTTTTTGATTGCTTCACAAGAATTTGGATTC CAATTTTTCCAGCGGACACAATCCCTAATGACCCTCAAAGAGCTTGATCCTTCCTCCGGGAAGCAGGTGAAGAGGGAGTACAAGCTGTTGAATTTGTTGG AGTTCAGTAGTTTTCGTAAAAGAATGTCTGTAATAGTAAGAGATGAAGATGGTAAAATCTATCTTCTCTGCAAAGGGGCAGATAGCATCATCTTCGATAG GCTTGCAGATAATGGTGGGGCATACCAAGAAGCAACAACCTCACACCTTTCAAATTATGCAGAAGATGGATTTCGGACTCTAGCATTTGCTTACCGAGTA CTTGAGCTGGCTGAGTACGAACAGTGGAACTCAATATTTATGCAGGCAAAGACTACAGTAGGTCCTGAAAGAGAAGAATTACTGGAGCATGCAACTGAAA TGATAGAAAAAGAACTAATTTTATTAGGAGTTGCTGCTGTTGAAGACAAGTTACAGAAAGGGGTTGTAGAATGCATAGATAAACTTGCTCAAGCAGGGAT GAAAATATGGCTGCTCACTGGTGACAAGAAGGAAACTGCTATAAACATCGGATTTTCTTGCAGCTTGCTTCGGCAGGACATGAAACAGTTCCATGTATGT TTGAGCAAAGAAACCGAGTCTAAAAACCAACTGAAGGCTATGAAAGAGGAGATTTTGCACCAGATTGAAAGTTCATACCAAGTGATGTGCCAAGATAGCA ATAAATATTCACCCTTTGCTTTGGTACTGGATGGAAGAGCTCTTGAAATTGCTTTGAAATCTGATGTGAGGGACCAGTTCTTACAGTTAGCTGTTAATTG TGCTTCTGTTATATGCTGCCGAGTATCTCCAAAACAGAAGGCTTTGATTACTCGATTGGTGAAGGAGTACACTGGTAAGACAACCTTGGCAATTGGGGAT GGGGCAAATGATGTTGGCATGATTCAAGAAGCTGATATTGGAGTTGGAATCAGTGGAATGGAAGGGATGCAAGCAGTCATGGCTAGTGACTTCTCATTGC CTCAGTTCCGATTTCTGGAGAGATTACTCATAGTCCATGGGCATTGGTGTTACAAGAGAATCTCTAAGATGGTTCTATACTTTGTATACAAGAACATTGC TTTCGGCCTCACTCTATTCTACTACGAAATATTCACAAATTTCTCTGGGGATTCCTTATATGATGATTGGTATATGGTAATGTTCAATGTCCTTTTGACG TCATTGCCAGTTATATCACTTGGAGTCTTTGAGCAGGACGTTTCGTCAGATGTATGCCTCCAGTTTCCATCCCTTTACAGACAAGGGCAGAGGAACATAA TTTTTTCTTGGAGCCGTATTGTTGGTTGGATACTGAATGGCACAGTTGCTGCCTCAGTCGTATTCCTTGCAAACATATACATATTCTCTCCTGCTGCATT CAGACAAGAAGGAAATGTAGCAGACATCACACATTTTGGTGCCATTATGTACACATGTATAATATGGACTGTCAACTGCCAAATTGCTCTCATCATCACT CACTTCACTTGGATCCAACATCTTTTCATCTGGGGCAGCATCCTGTTATGGTACATTTTCGCAGTCGCCTACGGTGCACTCCCTCCTGACTACTCTCAAC GAGGATTCAACATCATCACAGAATCGATCGGATCAACACCTAAGTACTGGATTGCTACATTTCTTGTTATAGTTGTTGCATTGCTTCCATACTTCACACA CATTGCCTTTCAAAGACTGCTCTATCCGATGGACGATCACATAATCCAAGAAATGAAACACTGCAAGAAAGATGTTACAGAAAATCAGATGTGGCTGAGA GAACAACGAAACTCGCAGAGGAGCACTCAGGTTGGATTTTCAGCAAGAGTCGATGCAAGAATTCGGTCATTCAAAGAAGGGTTGAGCCTAAAGAGGATAT CAATCTATAAGTCTGTGACAAACACTCCTTTTTATAAATCATGGACAAGCAGTCCAATATTTTCTTAA
AA sequence Show only first row Show all	>Potri.001G081200.1 pacid=42791679 polypeptide=Potri.001G081200.1.p locus=Potri.001G081200 ID=Potri.001G081200.1.v4.1 annot-version=v4.1 MHGSSRRTKGKVRWSKLYSFSCFRPHTSDPDSAQELIGQPGFSRVVFCNEPQVHKRKPYKYTNNSVSTKKYTAVTFLPKALFEQFRRVANLYFLLTAALS ITSLAPVKPVSLIAPLVFVVGISMLKEAVEDWYRFLQDLNVNTRTVKAHAGNGLFVDKLWREISVGDVVKVNKDEYFSSDLLLLSSSYEDGVCYVETMNL DGETNLKIKRCLEVTLDLNEDAKFSEFKATTRCEDPNPSLYTFVGNLEFENKIYPLSPSQILLRDSKLRNTDYVYGAVIFSGHDTKVVRNSTMSPSKRSR LEKKMDKVIYLLFSMLLLISLVTSIGSAVVIKSDMSQWWYLSLEDSDPLFDPSNPLKSGFLQFIRALILYGYLIPISLYVSIEIVKVLQAKFINKDKKMY DEATCKSVQARTSNLNEELGQVEIILSDKTGTLTCNQMEFRKCSIAGISYGGNINEVDIAASKRMNTDIEAYRSSIDQSDTTSQSLEMSEFSVADIITQE AILRGQENADNLNARNSRLSDVRKESVIRVIKGFNFRDDRLMNNQWIYRSDLFDMTMFFRVMALCHTGIPVEDGQTDKLKYEAESPEEVAFLIASQEFGF QFFQRTQSLMTLKELDPSSGKQVKREYKLLNLLEFSSFRKRMSVIVRDEDGKIYLLCKGADSIIFDRLADNGGAYQEATTSHLSNYAEDGFRTLAFAYRV LELAEYEQWNSIFMQAKTTVGPEREELLEHATEMIEKELILLGVAAVEDKLQKGVVECIDKLAQAGMKIWLLTGDKKETAINIGFSCSLLRQDMKQFHVC LSKETESKNQLKAMKEEILHQIESSYQVMCQDSNKYSPFALVLDGRALEIALKSDVRDQFLQLAVNCASVICCRVSPKQKALITRLVKEYTGKTTLAIGD GANDVGMIQEADIGVGISGMEGMQAVMASDFSLPQFRFLERLLIVHGHWCYKRISKMVLYFVYKNIAFGLTLFYYEIFTNFSGDSLYDDWYMVMFNVLLT SLPVISLGVFEQDVSSDVCLQFPSLYRQGQRNIIFSWSRIVGWILNGTVAASVVFLANIYIFSPAAFRQEGNVADITHFGAIMYTCIIWTVNCQIALIIT HFTWIQHLFIWGSILLWYIFAVAYGALPPDYSQRGFNIITESIGSTPKYWIATFLVIVVALLPYFTHIAFQRLLYPMDDHIIQEMKHCKKDVTENQMWLR EQRNSQRSTQVGFSARVDARIRSFKEGLSLKRISIYKSVTNTPFYKSWTSSPIFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G081200 [exp]	0	1
AT1G31710			Copper amine oxidase family pr...		Potri.010G088800 [exp]	4.00	0.9024	DAO.2
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Potri.002G007000 [exp]	6.85	0.9164
					Potri.013G045500 [exp]	10.09	0.9103
AT5G62280			Protein of unknown function (D...		Potri.014G069000 [exp]	13.19	0.8110
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.003G191500 [exp]	19.36	0.9022
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.001G069948 [exp]	19.74	0.8983
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.008G079500 [exp]	22.31	0.9026
AT4G31250			Leucine-rich repeat protein ki...		Potri.006G279300 [exp]	26.32	0.7945
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.010G143500 [exp]	27.94	0.8888
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134400 [exp]	36.59	0.8868

Compare expression of checked genes

Potri.001G081200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.