Plant FIBer expression Database

Potri.001G082100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16780 768 / 0 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
AT3G14700 81 / 4e-17 SART-1 family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G148501
[exp]
0 / 1 AT5G16780 0 / 1 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000639
[exp]
797 / 0 AT5G16780 818 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
Lus10023155
[exp]
794 / 0 AT5G16780 811 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
Lus10014613
[exp]
91 / 2e-21 AT5G16780 110 / 6e-29 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
Lus10000285
[exp]
0 / 1 AT5G16780 187 / 1e-53 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03343 SART-1 SART-1 family
Representative CDS sequence
>Potri.001G082100.1 pacid=42793640 polypeptide=Potri.001G082100.1.p locus=Potri.001G082100 ID=Potri.001G082100.1.v4.1 annot-version=v4.1
ATGGATATGGACTGGTCTGAATCTAGGCACGAGCGACGTGAAGAGAGGGATGATGTGGACGACAAGGTGAATGGAGTTGAAAAATCGAGTAAGCATACTA
GGAAGAAGAGCGGCAGAGGAGAGGAGAGAGAGAGGGAGAGGGATAGGGATCATAAGAGTAAAGACAGGGAACGGTCGAAGAAAACCAGCGATAATGATGT
TGGTAAAGATAAGAGTAGAGATAGTAAGGTGAAGGATAAAGAATATGACCGAGAGAAGTCTAGAGAGAAGGATAAGGATAGGAAAGATCGAGGGAAGGAA
AAGGAAAGGGAGAGGGATAGGGAAAAGAAGGAAAAGGAAAGGGAAAGAGTGAAGGAGAAGGAGAAGCATAAGGATAGAGAGAAGGACAGGGATAATGATA
AAGAGAGGGAGAGGGGGAGAGAGAAGACTAAGGAGAGAGAGAGAGACAGGGAAGCGGATCAAGATAAAGAGAGGTCCAGAGAGAAGGATAGGGCAAGCAG
AAAAAGCAACGAGGAAGATTATGATGACAAGGTTCAGATGGATTATGAAGATGAAGTGGACAAGGATAATCGAAAACAAGGGAAGGTTTCTTTTCGTGAT
GAAGATGATCAAAGTGCTGAAGGTGCATCAGCTGGAGCTCACTCATCTGCCTCGGAGCTTGGGCAACGCATTTTGAAGATGAAGGAAGAAAGAACAAAGA
AAAAGTCTGAACCTGGTTCTGACATTTTAGCATGGGTTGGTAAGAGTCGCAAGATTGAGGAGAACAAGTATGCTGCGAAAAAGAGAGCCAAGCATCTCTC
AAAGATTTTTGAGGAGCAGGACAATATTGGTCAAGGAGGCAGTGATGATGAGGAAGCAGACCAGCATAATGCTTATAATCTTGCTGGAATCAAGGTTCTT
GATGGCCTTGACAAGGTATTGGAAGGCGGAGCTGTTGTTTTGACACTCAAAGATCAGAATATACTTGCAGATGGTGACATCAATGAAGAGGTTGATATGC
TTGAAAATGTGGAAATTGGAGAGCAGAAGCGCCGGGATGAGGCTTATAAAGCTGCTAAGAAAAAGACGGGTATCTATGAAGACAAGTTCAATGATGATCC
TGCTTCAGAGAAGAAAATGCTTCCGCAATATGACGATGCCAATGCAGATGAGGGCGTAACTCTTGATGAAAGGGGCCGCTTCACTGGCGAAGCAGAGAAA
AAGCTGGAGGAGCTCCGCAGAAGGCTACAAGGTACTTCCACAAGTGCTCGCTTAGAAGATCTAAACTCATCTGGAAAGATCTCATCAGATTACTTTACTC
ATGAAGAGATGCTTCAGTTTAAAAAGCCAAAGAAAAAGAAATCTTTGCGAAAGAAGGATAAGCTAGATATAGATGCCCTTGAAGCAGAAGCTGTGTCGGC
AGGGTTGGGTATTGGAGATCTTGGTTCTAGGAAAGATGGGAGAAGGCAGGCCATTAGAGAGGAACAAGAGAGATCTGAGGCTGAAATGAGAAACAATGCC
TACCAATCAGCTTATGCTAAAGCAGATGAGGCATCAAAATCACTGCGACTAGATCGAACTCTACAAACTAAAGTGGAGGAAGAGGAAAATCTAGTGTTTG
CAGATGACGAAGAAGATCTTTATAAGTCATTAGAAAGAGCAAGGAAATTAGCTCTTAAAAAGCAAGAGGCGGAAGCATCTGGTCCTCTAGCAATTGCTCA
CCTTGCCTCCACCACTTTAAGCAGTCAAATTGCAGATGATAAAAACCCTGAAACTGGAGAGTCACATGAAAACAAACTTGTGTTCACCGAGATGGAAGAG
TTTGTCTCAGCTATTCAGCTTGCTGAAGAAGTTCACAAGCCTGACAACGAAGATGTTTTCATGGACGAAGATGAACCACCAAGAGTTTCTGATGAAGAAC
AAAAGGACGAGGCTGGTGGATGGATGGAAGTTCCAGACAACAGTAAAGATGAAAATCCTGTCAATGAGGATGAGGAGATAGTTCCTGATGAAACCATACA
TGAGGTTGCTGTTGGGAAAGGATTATCTGGTGCACTGAAGTTGCTTAAAGAGCGAGGTACACTTAAAGAAAGTATTGACTGGGGTGGCAGAAATATGGAC
AAGAAAAAGAGCAAGCTTGTTGGTATCGTAGATGATGATGTTGGTACTAATAATGATAATAAGTTCAAGGATATCCGCATCGAGAGGACAGATGAATTTG
GGCGAATTATGACTCCGAAGGAAGCCTTTCGAATGATTTCTCATAAATTCCATGGGAAGGGGCCTGGCAAAATGAAGCAAGAAAAGAGAATGAAACAATA
CCAGGAAGAATTGAAGTTGAAGCAAATGAAAAATTCAGATACACCATCACTGTCTGTGGAGCGGATGAGGGGAGCTCAAGCTCAATTAAAGACACCTTAC
CTTGTCCTCAGTGGTCATGTTAAACCAGGGCAAACCAGTGATCCTAGAAGTGGCTTCGCAACTGTTGAGAAGGATTTCCCAGGAGGCTTAACACCCATGC
TCGGTGATAAAAAGGTTGAGCACTTCTTGGGGATAAAGCGCAAGCCTGAGACTGGATTCTCTGGTGCACCAAAGAAGCCTAAAATTTGA
AA sequence
>Potri.001G082100.1 pacid=42793640 polypeptide=Potri.001G082100.1.p locus=Potri.001G082100 ID=Potri.001G082100.1.v4.1 annot-version=v4.1
MDMDWSESRHERREERDDVDDKVNGVEKSSKHTRKKSGRGEERERERDRDHKSKDRERSKKTSDNDVGKDKSRDSKVKDKEYDREKSREKDKDRKDRGKE
KERERDREKKEKERERVKEKEKHKDREKDRDNDKERERGREKTKERERDREADQDKERSREKDRASRKSNEEDYDDKVQMDYEDEVDKDNRKQGKVSFRD
EDDQSAEGASAGAHSSASELGQRILKMKEERTKKKSEPGSDILAWVGKSRKIEENKYAAKKRAKHLSKIFEEQDNIGQGGSDDEEADQHNAYNLAGIKVL
DGLDKVLEGGAVVLTLKDQNILADGDINEEVDMLENVEIGEQKRRDEAYKAAKKKTGIYEDKFNDDPASEKKMLPQYDDANADEGVTLDERGRFTGEAEK
KLEELRRRLQGTSTSARLEDLNSSGKISSDYFTHEEMLQFKKPKKKKSLRKKDKLDIDALEAEAVSAGLGIGDLGSRKDGRRQAIREEQERSEAEMRNNA
YQSAYAKADEASKSLRLDRTLQTKVEEEENLVFADDEEDLYKSLERARKLALKKQEAEASGPLAIAHLASTTLSSQIADDKNPETGESHENKLVFTEMEE
FVSAIQLAEEVHKPDNEDVFMDEDEPPRVSDEEQKDEAGGWMEVPDNSKDENPVNEDEEIVPDETIHEVAVGKGLSGALKLLKERGTLKESIDWGGRNMD
KKKSKLVGIVDDDVGTNNDNKFKDIRIERTDEFGRIMTPKEAFRMISHKFHGKGPGKMKQEKRMKQYQEELKLKQMKNSDTPSLSVERMRGAQAQLKTPY
LVLSGHVKPGQTSDPRSGFATVEKDFPGGLTPMLGDKKVEHFLGIKRKPETGFSGAPKKPKI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G16780 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVEL... Potri.001G082100
[exp]
0 1
AT5G27230 Frigida-like protein (.1) Potri.005G043900
[exp]
1.41 0.9354
AT2G35540 DNAJ heat shock N-terminal dom... Potri.003G097800
[exp]
1.41 0.9337
AT3G63500 Protein of unknown function (D... Potri.001G264100
[exp]
2.44 0.9208
AT5G27230 Frigida-like protein (.1) Potri.005G044000
[exp]
2.44 0.9279
AT1G44910 ATPRP40A pre-mRNA-processing protein 40... Potri.014G013100
[exp]
2.64 0.9206
Potri.005G043750
[exp]
2.82 0.9226
AT5G55660 DEK domain-containing chromati... Potri.001G367400
[exp]
3.16 0.9220
AT3G58110 unknown protein Potri.019G091700
[exp]
5.65 0.8882
AT1G80930 MIF4G domain-containing protei... Potri.016G121100
[exp]
5.74 0.9042
AT2G16485 nucleic acid binding;zinc ion ... Potri.004G161700
[exp]
6.70 0.9146

Potri.001G082100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.