Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38970 468 / 1e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 467 / 1e-156 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT5G60710 455 / 2e-151 Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G08050 434 / 3e-144 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G49665 206 / 4e-57 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 175 / 2e-46 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G65683 160 / 2e-41 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 112 / 2e-25 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT1G19110 54 / 4e-07 inter-alpha-trypsin inhibitor heavy chain-related (.1) AT2G01150 44 / 6e-05 RHA2B RING-H2 finger protein 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G148400 [exp] 965 / 0 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 475 / 3e-159 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G223766 [exp] 471 / 1e-157 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G010350 [exp] 453 / 9e-151 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.002G107902 [exp] 181 / 4e-48 AT5G49665 675 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G001300 [exp] 141 / 1e-35 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 140 / 4e-35 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.003G068000 [exp] 50 / 4e-06 AT1G19110 734 / 0.0 inter-alpha-trypsin inhibitor heavy chain-related (.1) Potri.004G209600 [exp] 42 / 0.0001 AT4G38140 88 / 3e-23 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023527 [exp] 465 / 3e-155 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 464 / 3e-155 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 464 / 1e-154 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 455 / 1e-151 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 437 / 3e-144 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003485 [exp] 144 / 1e-35 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 130 / 2e-33 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 120 / 4e-28 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037391 [exp] 109 / 4e-26 AT5G60710 181 / 6e-52 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10037392 [exp] 81 / 3e-17 AT5G60710 157 / 7e-45 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [poplar] [flax] vWA-like PF00092 [poplar] [flax] VWA von Willebrand factor type A domain CL0128 [poplar] [flax] PF14624 [poplar] [flax] Vwaint VWA / Hh protein intein-like
Representative CDS sequence Show only first row Show all	>Potri.001G082150.2 pacid=42791348 polypeptide=Potri.001G082150.2.p locus=Potri.001G082150 ID=Potri.001G082150.2.v4.1 annot-version=v4.1 ATGGCCTCTAACGCATGGCGCAAACTCAAAAAATCCCTCAAGTCAAAGCTCTCATTCCTCTCCACCCCCAGGTCCCCCACCAACGACACAACTGCCACCA CCGAAAATCCCCGCGTCGCCACCGCTACTCCTCCACTACTTCCAACAATATCATCATCATCCTCGTTCAGTTCTCGTCTCTCGCGTAGCTTCAGTCTCCA CTCTTCTCCAAAAAAATGTGCCATTTGCTTGACGAGTTTGAAAAAAGGGCAAGGCCAAGCCATCTTTTATGCTGAGTGTTCTCACCCTTTCCACTTCAAT TGCATTGCTGACAATGTCAAGCATGGTAATCTCAGATGCCCTGTTTGCCGCTCCAAATGGAAAGATGTGCCTTTTCAAGCGCCAAAAAATGTCCCCAGTT TTCAACGTAGTGGTTCATTGCATGCTTATGTACCTAATGCATCTCCAGTTCATATTGAGCCGGATCACTTCTCAGACGATGAACTAGTCCCAGATGTTTC TCAAGGTCAACCCTCTTCATCTCGACCCCATGCTATAACTGTGAAGACTTTACCAGAGTATCCTGCTGTTTCTGCTTCGGAATCTTTCTCTAAGTTTGGT GTTCTTGTCCGTGTTCTCGCTCCTCCGCTTGATAATACTCTACCTCATCACCGTGCACCAATTGATATTGTAAATGTGTTGGATGTTAGTGGTAGCATGG CAGGCAAGCTGATACTTCTCAAGCGTGCTGTCAACTTTATCATACAAAACTTAGGCCCTTCAGATCGACTTTCGATTGTGACTTTCTCTTCATCAGCTCG AAGAATCTTACCACTTAGAACAATGTCTGGAAGTGGCCGTGAAGATGCCATAAGTGTTGTAAACTCTCTTTCTGCAACTGGTGGAACTAATATTGTTGCA GGGCTCAGGAAAGGGGTTCGGGTTCTGGAAGAACGGCGTCAACATAATTCAGTTGCAAGCATTATCCTTTTATCTGATGGTTGTGATACACAAAGTCACA GTACACATAATAGATTGGAATATCTAAAGTTGATTTTTCCTAGCAATAATGCATCTGGAGAGGAGTCTCGGCAGCCAACTTTCCCAATTCACACATTCGG GTTTGGATTGGATCATGATTCTGCTGCAATGCATGCTATATCTGATGTATCCGGCGGCACATTTTCCTTCATTGAGTCCATTGACATTTTACAAGATGCT TTTGCAAGATGCATTGGCGGTCTTACAAGTATTGTGGCCCGGGACGTTCAACTCAAAGTTAGGTCAGCATCACCAGGAGTGCAGATTTTGTCGACCCCTT CTGGGAGACACAAGAATAAAATTTTTGATCAGGGACACCAAGCTACGATTGATATCGGAGATTTATATGCAGAAGAGGAGAAGGAGTTTTTAGTGTTCCT CTCAATTCCTGTATTTCCAGCTGTTGATGGTGAGGAAATGTTGGAAAACATGCCATTGGTGGATGTTTCAGGCTTTCAGAAAGATTCGGTGTCGACGGAT ACAGTCGAAGTAGAAGGTGAGAGAGTTGAGATACGACGACCTCAGTTTTTATCTTCTACTGATTGGGTACCGTGTTTGGAGGTTGATAGGCAAAGAAATC GTTTGCTAGTGACAGAAACTATTGCCAAGACACAAAGGATGGCTGAAATGGGAGATTTAAAGGGTGCACAGGCTCTTCTGGCAGAGCAACTATCCACTCT TCTATCTACAGCTTCTGCCCAAGCAGGAGATGATCTATGTAATCAGCTAGAAGCTGAGTTGAAAGAAACCAGGAAGAGAATGGAAACCAGGGAATTATAT GAACGCTCTGGGCGTGCATATGTTCTTTCGGGAATGAGTTCTCACTCATGGCAAAGGGCTGCAACTAGGGGTCCCTCAATGCCAATCTCATCAGGTGGGA ACTCAGATATGAGGAGGACTACCACTAGCTATGAAACACCATCTATGACTACCATGGTAACGAAGTCACAAAATTTGAACTTGGCACCTAGAGAGTAG
AA sequence Show only first row Show all	>Potri.001G082150.2 pacid=42791348 polypeptide=Potri.001G082150.2.p locus=Potri.001G082150 ID=Potri.001G082150.2.v4.1 annot-version=v4.1 MASNAWRKLKKSLKSKLSFLSTPRSPTNDTTATTENPRVATATPPLLPTISSSSSFSSRLSRSFSLHSSPKKCAICLTSLKKGQGQAIFYAECSHPFHFN CIADNVKHGNLRCPVCRSKWKDVPFQAPKNVPSFQRSGSLHAYVPNASPVHIEPDHFSDDELVPDVSQGQPSSSRPHAITVKTLPEYPAVSASESFSKFG VLVRVLAPPLDNTLPHHRAPIDIVNVLDVSGSMAGKLILLKRAVNFIIQNLGPSDRLSIVTFSSSARRILPLRTMSGSGREDAISVVNSLSATGGTNIVA GLRKGVRVLEERRQHNSVASIILLSDGCDTQSHSTHNRLEYLKLIFPSNNASGEESRQPTFPIHTFGFGLDHDSAAMHAISDVSGGTFSFIESIDILQDA FARCIGGLTSIVARDVQLKVRSASPGVQILSTPSGRHKNKIFDQGHQATIDIGDLYAEEEKEFLVFLSIPVFPAVDGEEMLENMPLVDVSGFQKDSVSTD TVEVEGERVEIRRPQFLSSTDWVPCLEVDRQRNRLLVTETIAKTQRMAEMGDLKGAQALLAEQLSTLLSTASAQAGDDLCNQLEAELKETRKRMETRELY ERSGRAYVLSGMSSHSWQRAATRGPSMPISSGGNSDMRRTTTSYETPSMTTMVTKSQNLNLAPRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.001G082150 [exp]	0	1
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.012G033500 [exp]	1.73	0.9454
AT1G11330			S-locus lectin protein kinase ...		Potri.001G412100 [exp]	1.73	0.9332
AT5G12890			UDP-Glycosyltransferase superf...		Potri.001G016300 [exp]	6.00	0.9262
AT1G10940		ASK1, SNRK2-4, ...	SNF1-related protein kinase 2....		Potri.004G138300 [exp]	6.00	0.9166	SPK.2
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.004G175000 [exp]	7.54	0.8988	UBC.11
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.017G150500 [exp]	7.93	0.9260
AT1G06540			unknown protein		Potri.005G201300 [exp]	8.00	0.9221
AT5G52660	MYB		Homeodomain-like superfamily p...		Potri.017G146800 [exp]	8.48	0.9212
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Potri.008G095500 [exp]	10.09	0.9175
AT5G38260			Protein kinase superfamily pro...		Potri.017G117120 [exp]	11.66	0.9270

Compare expression of checked genes

Potri.001G082150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.