Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2) AT5G48655 81 / 3e-18 RING/U-box superfamily protein (.1.2.3) AT4G03510 49 / 9e-07 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT2G32950 49 / 2e-06 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G21070 48 / 4e-06 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT1G18660 47 / 6e-06 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT2G42030 47 / 7e-06 RING/U-box superfamily protein (.1) AT5G54990 45 / 1e-05 RING/U-box superfamily protein (.1) AT2G26350 45 / 2e-05 PEX10, ATPEX10 peroxin 10 (.1) AT3G58030 45 / 2e-05 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G148300 [exp] 280 / 2e-95 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.014G191400 [exp] 79 / 9e-18 AT5G48655 158 / 8e-49 RING/U-box superfamily protein (.1.2.3) Potri.002G245500 [exp] 79 / 9e-18 AT5G48655 154 / 2e-47 RING/U-box superfamily protein (.1.2.3) Potri.002G141300 [exp] 51 / 4e-07 AT2G44950 877 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.001G358100 [exp] 50 / 1e-06 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.014G055800 [exp] 47 / 5e-06 AT2G44950 917 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.012G068100 [exp] 47 / 7e-06 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.006G222000 [exp] 47 / 7e-06 AT2G26350 519 / 0.0 peroxin 10 (.1) Potri.011G120800 [exp] 46 / 1e-05 AT4G27470 167 / 7e-51 RING membrane-anchor 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022569 [exp] 82 / 7e-19 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10022774 [exp] 80 / 5e-18 AT5G48655 153 / 7e-47 RING/U-box superfamily protein (.1.2.3) Lus10018271 [exp] 56 / 9e-10 AT3G07200 51 / 2e-08 RING/U-box superfamily protein (.1.2) Lus10040641 [exp] 50 / 1e-07 AT3G07200 46 / 1e-06 RING/U-box superfamily protein (.1.2) Lus10036151 [exp] 50 / 6e-07 AT4G21070 381 / 6e-118 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Lus10020007 [exp] 48 / 3e-06 AT2G26350 449 / 2e-158 peroxin 10 (.1) Lus10015722 [exp] 46 / 1e-05 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 46 / 1e-05 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10022324 [exp] 45 / 2e-05 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10032119 [exp] 45 / 4e-05 AT3G27330 251 / 1e-75 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G082200.2 pacid=42789634 polypeptide=Potri.001G082200.2.p locus=Potri.001G082200 ID=Potri.001G082200.2.v4.1 annot-version=v4.1 ATGAATTTACTGGAGAATTTTGACAACAACATGATTTTTGTGGAGAACTTAGACGACAACAAGGTGTTTCTGTATCACGGAGACAACACTATGGATTTAC TGGGGAATACAGATCGTCTGGAAGATGATTTGTGGGAAGCCGAGAGAAGTTACTTTCAGCACTCTAATCTCAACTATCCACCTCCGATTCAGAACAATAT GCCTCTCCATGGCATGTACTTTCCTTGTCATCCTCGGAATTTTCAAGCTGAAGTGTATGGTCTGACCAGACAACATCAAACTGCACAAGATGTTGAGGTC ATTGATGATGATATTGCTATAATCTCGCCCAGCATGTTTGACCAACAGGCCAGGAAGAAAGCTAGGAGAAATACTGATGCAGTAAGGGAAAACATAAATA TCGTCAATCAGGCTAGGAGTGTGCTCCAATTCCATGGATTGTTGTCCCAGCCTGTGCCATCACCCCAATTACCTGGATTGTGTCAAACTATGCCACCACC CCAATTCCCTGGATTTTCTCAGACTGAACCACCAGCCCAAGTTTCTGGATTGTCCCAGGCCGTGCCACCACCAGCGGCACCTGCATTTCGTTGCCCAATT TGTATGGATGAGTTACAAGAAGCAACATCAACAAAATGTGGTCATGTTTTCTGCAAGAACTGCATTAAAAAAGCACTAGCTGTTCAGAAGAAGTGCCCTA CTTGCAGGATGAAATGCAGAGCGAAATCCATCTACAGGATCTTTCTTCCCACAGTCCTATAA
AA sequence Show only first row Show all	>Potri.001G082200.2 pacid=42789634 polypeptide=Potri.001G082200.2.p locus=Potri.001G082200 ID=Potri.001G082200.2.v4.1 annot-version=v4.1 MNLLENFDNNMIFVENLDDNKVFLYHGDNTMDLLGNTDRLEDDLWEAERSYFQHSNLNYPPPIQNNMPLHGMYFPCHPRNFQAEVYGLTRQHQTAQDVEV IDDDIAIISPSMFDQQARKKARRNTDAVRENINIVNQARSVLQFHGLLSQPVPSPQLPGLCQTMPPPQFPGFSQTEPPAQVSGLSQAVPPPAAPAFRCPI CMDELQEATSTKCGHVFCKNCIKKALAVQKKCPTCRMKCRAKSIYRIFLPTVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07200			RING/U-box superfamily protein...		Potri.001G082200 [exp]	0	1
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039200 [exp]	6.48	0.6412
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.016G076000 [exp]	15.62	0.6366
AT2G34930			disease resistance family prot...		Potri.001G043800 [exp]	23.23	0.6307
AT3G04900			Heavy metal transport/detoxifi...		Potri.009G126600 [exp]	25.09	0.5077
AT5G17680			disease resistance protein (TI...		Potri.019G097800 [exp]	31.93	0.6041
AT3G46280			protein kinase-related (.1)		Potri.005G043700 [exp]	35.15	0.5830
AT1G17860			Kunitz family trypsin and prot...		Potri.010G007811 [exp]	42.60	0.5799
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.002G015800 [exp]	76.13	0.4803
					Potri.010G007833 [exp]	82.52	0.5310
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014512 [exp]	87.00	0.5601

Compare expression of checked genes

Potri.001G082200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.