Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02050 63 / 2e-13 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT4G13420 61 / 9e-13 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT4G23640 57 / 1e-11 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT2G30070 56 / 4e-11 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT2G40540 54 / 3e-10 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT1G70300 48 / 3e-08 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT5G09400 45 / 2e-07 KUP7 K+ uptake permease 7, K+ uptake permease 7 (.1) AT1G60160 44 / 5e-07 Potassium transporter family protein (.1) AT4G33530 44 / 6e-07 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1) AT2G35060 42 / 2e-06 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G148200 [exp] 86 / 7e-22 AT2G30070 831 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.014G144900 [exp] 65 / 3e-14 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 65 / 3e-14 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.007G068200 [exp] 63 / 5e-14 AT2G30070 198 / 3e-59 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.005G095900 [exp] 62 / 3e-13 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G133900 [exp] 56 / 4e-11 AT4G23640 947 / 0.0 TINY ROOT HAIR 1, Potassium transporter family protein (.1) Potri.008G147400 [exp] 55 / 1e-10 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.013G083400 [exp] 54 / 3e-10 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.010G094300 [exp] 52 / 1e-09 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018270 [exp] 76 / 6e-18 AT2G40540 652 / 0.0 potassium transporter 2 (.1.2) Lus10024709 [exp] 60 / 2e-12 AT3G02050 636 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Lus10032327 [exp] 59 / 4e-12 AT2G30070 635 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10030539 [exp] 55 / 8e-11 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10012888 [exp] 54 / 2e-10 AT5G14880 566 / 0.0 Potassium transporter family protein (.1) Lus10030857 [exp] 52 / 2e-09 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10013304 [exp] 51 / 2e-09 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10030632 [exp] 50 / 6e-09 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10029050 [exp] 50 / 7e-09 AT2G40540 563 / 0.0 potassium transporter 2 (.1.2) Lus10032154 [exp] 48 / 3e-08 AT2G30070 562 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G082267.1 pacid=42789509 polypeptide=Potri.001G082267.1.p locus=Potri.001G082267 ID=Potri.001G082267.1.v4.1 annot-version=v4.1 ATGGCATATATGATGGGAAATACTCAGTGTCTTGGCGATGAAACATCATCACTTGTGAAGAAATCTGTCATTAACATTGCACATGGTTTCTCGAGACAGA ACTGTCGAAGCCCATCCACAGCACAAGGGGTTCCTCGTACATCTTTGATTGAAGTAGGAATGTCATATTATGTTTAG
AA sequence Show only first row Show all	>Potri.001G082267.1 pacid=42789509 polypeptide=Potri.001G082267.1.p locus=Potri.001G082267 ID=Potri.001G082267.1.v4.1 annot-version=v4.1 MAYMMGNTQCLGDETSSLVKKSVINIAHGFSRQNCRSPSTAQGVPRTSLIEVGMSYYV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.001G082267 [exp]	0	1
AT1G50060			CAP (Cysteine-rich secretory p...		Potri.009G083600 [exp]	13.63	0.9598
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Potri.016G056400 [exp]	16.61	0.9540
AT5G47090			unknown protein		Potri.001G149800 [exp]	20.78	0.8728
AT4G16265		NRPE9B, NRPD9B,...	RNA polymerases M/15 Kd subuni...		Potri.010G142500 [exp]	23.13	0.9539
					Potri.002G099150 [exp]	30.59	0.9530
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Potri.008G172200 [exp]	33.04	0.7772
AT5G40140			RING/U-box superfamily protein...		Potri.017G073400 [exp]	33.98	0.9528
					Potri.012G082350 [exp]	39.30	0.9521
					Potri.006G062050 [exp]	44.23	0.9521
AT1G06280	AS2	LBD2	LOB domain-containing protein ...		Potri.013G123900 [exp]	45.38	0.9521

Compare expression of checked genes

Potri.001G082267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.