Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24110 135 / 8e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G147800 [exp] 296 / 1e-101 AT4G24110 108 / 2e-28 unknown protein Potri.014G089600 [exp] 49 / 1e-06 AT1G01500 355 / 3e-123 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.002G163300 [exp] 45 / 3e-05 AT1G01500 354 / 1e-122 Erythronate-4-phosphate dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017328 [exp] 150 / 3e-44 AT4G24110 168 / 3e-51 unknown protein Lus10001676 [exp] 150 / 3e-44 AT4G24110 165 / 4e-50 unknown protein Lus10016311 [exp] 52 / 1e-07 AT1G75180 353 / 2e-122 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10010803 [exp] 52 / 2e-07 AT1G75180 357 / 1e-123 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G082500.1 pacid=42791687 polypeptide=Potri.001G082500.1.p locus=Potri.001G082500 ID=Potri.001G082500.1.v4.1 annot-version=v4.1 ATGTGTAGAACCACAGCCTTTCATGGGTTGCAATCAAGAGCCCTGCAAAATCACTTAAAGATCAAATCTTTTTACGTCCGCCTCACTGGTTTCGAGCCCG GTAACAAACCAGTAACCGAGTCACTCACTCTTGTTTATCTTCCTCGTGCTCATGATCTTGTCGTTGATGGGTCCAAGATTCGACCCGAGTCTAAAGCGTT CTTGGGTCTTTATAGGATTGTTGATGTCGATAATAAGGAAGACGATGGAGGGGTTATGTTCGGGTCAAGAGAGCGGGTTCGGGTCAATGAAGGGGTTCGG TTTGAGGTTTATTTAAGAGAAGAGAGGGTGTTAGAGGGGAGTTTTAGAAGAGAAGCTGACACGGAAAAGTGGAAGTTGGAGTGTTGTGGTGGCGGCAGTG AGGTCAGGGCGGTGGAGGTTTGTGTGGCGGTGGAGGGACACGTGGCGTTGGTTAAGAAGGTGATGGAGAGGAGAAAGAAGAGTAGAAGAGGGTGTGATAG GCTGGAGGTGATTCCAGAGGAGAGGGAGGTTGTTGAGGATGAACCGGACGGTGGATGTTGTTGTAGTGATGGCGAGGGGAGGCGGACGTACGGTGGAGAT TTGGAAGAGTGGTGCGGGCCAGACTGTGAGAAGGTCGAGATGGAATTGGAGGGTGTTAGATGGGCTATTGACGTTGGTGTCTGGGTCGTGTGTTTGGGTG TGGGTTTCATGGTTTCTAGAGCTTCTGCCAAGAGCTTGAGAAGATTGCTTTGA
AA sequence Show only first row Show all	>Potri.001G082500.1 pacid=42791687 polypeptide=Potri.001G082500.1.p locus=Potri.001G082500 ID=Potri.001G082500.1.v4.1 annot-version=v4.1 MCRTTAFHGLQSRALQNHLKIKSFYVRLTGFEPGNKPVTESLTLVYLPRAHDLVVDGSKIRPESKAFLGLYRIVDVDNKEDDGGVMFGSRERVRVNEGVR FEVYLREERVLEGSFRREADTEKWKLECCGGGSEVRAVEVCVAVEGHVALVKKVMERRKKSRRGCDRLEVIPEEREVVEDEPDGGCCCSDGEGRRTYGGD LEEWCGPDCEKVEMELEGVRWAIDVGVWVVCLGVGFMVSRASAKSLRRLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24110			unknown protein		Potri.001G082500 [exp]	0	1
AT1G13570			F-box/RNI-like superfamily pro...		Potri.017G107600 [exp]	8.00	0.6742
AT5G01960			RING/U-box superfamily protein...		Potri.013G160000 [exp]	13.03	0.6542
AT5G59350			unknown protein		Potri.008G054400 [exp]	13.60	0.7302
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.012G127700 [exp]	21.54	0.6929
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Potri.016G115300 [exp]	25.57	0.7036
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.011G132700 [exp]	26.03	0.6827
AT3G03160			unknown protein		Potri.015G035400 [exp]	29.66	0.6252
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.005G158300 [exp]	30.46	0.6133
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Potri.013G015100 [exp]	33.01	0.6832
AT5G42785			unknown protein		Potri.002G034300 [exp]	38.30	0.6734

Compare expression of checked genes

Potri.001G082500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.