Plant FIBer expression Database

Potri.001G082600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64690 79 / 1e-16 BLT BRANCHLESS TRICHOMES, branchless trichome (.1)
AT3G11590 44 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G147900
[exp]
354 / 7e-123 AT1G64690 66 / 2e-12 BRANCHLESS TRICHOMES, branchless trichome (.1)
Potri.004G015800
[exp]
45 / 8e-05 AT1G50660 390 / 1e-126 unknown protein
Potri.011G090100
[exp]
44 / 0.0001 AT1G50660 689 / 0.0 unknown protein
Potri.011G003200
[exp]
43 / 0.0003 AT1G50660 350 / 1e-110 unknown protein
Potri.004G199500
[exp]
41 / 0.001 AT3G11590 399 / 6e-131 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017339
[exp]
141 / 3e-40 AT1G64690 105 / 2e-27 BRANCHLESS TRICHOMES, branchless trichome (.1)
Lus10001665
[exp]
94 / 4e-22 AT1G64690 109 / 9e-29 BRANCHLESS TRICHOMES, branchless trichome (.1)
Lus10005316
[exp]
79 / 2e-18 AT1G64690 45 / 8e-07 BRANCHLESS TRICHOMES, branchless trichome (.1)
Lus10021521
[exp]
56 / 3e-08 AT1G50660 750 / 0.0 unknown protein
Lus10040076
[exp]
56 / 3e-08 AT1G50660 756 / 0.0 unknown protein
Lus10043111
[exp]
49 / 4e-06 AT1G50660 616 / 0.0 unknown protein
Lus10032637
[exp]
46 / 3e-05 AT1G50660 625 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G082600.1 pacid=42789414 polypeptide=Potri.001G082600.1.p locus=Potri.001G082600 ID=Potri.001G082600.1.v4.1 annot-version=v4.1
ATGGAAGAAGTGAAGGTGATGATGATGAGCAGCCTACACCATTCCATGAATGAATCCAGTCCTCAAGACCCCATCACCACCACCACTTGCACCAGCTGGA
AATTGTACGAGAATCCATTTTATAATTCACAACATAATATCCAGCATCAACACCAACAACATTGTCAAAGTAACAAACATCTTCATCACCTCCCTCTTTC
AGCTCGCAAGATCGCAGCTTCTTTCTGGGATCTCACCTTCTTTAGACCTATCATGGATACCGAGCTAGATTTCGCTCGAGCACAGATCCTGGACTTGAAA
GCTGAGCTTGAATATGAACGCAAGGCACGTAAGAAGTTGGAGACTATGAGTAAGAGATTGGCTAAAGAACTGGCTGAAGAGAGAAGAGGAAGAGAAGCAC
TTGCGAGAGTTTGTGAAGAGCTTGCTAGAGAAATTTCTTGTGATAAAGAGGAGATTGATCACATGAAGAGAGAAATGGAGGAGGAAAGAAAGATGCTAAG
AATGGCTGAGGTATTAAGAGAAGAAAGAGTTCAAATGAAGCTCGCCGAGGCGAGAATGCTCTTTGAAGAGAAGTTGTTGGAATTGGGAGGAACAACTACA
CAGACAGAACTACATCACAATTCAGCTTCCAGGATGGAACAGAAGTATCAAGAAGATAAAGAAGCTGAAATATCAACTCCGTTCAAGGCCGCAGCTATTT
TGTCAAGCAAGCTAAACAGGTTAGTTTTGAGTGAAAAATCCTGTTACGACAACAGTGGTGCTGATTCAAAAGAATCAACAAGGGTGATCTTGAGTGAAAT
GTCATCATTCAATGACAAATCTCGTAGCATTTCATCAATGGTAATTCAGAGAAGTAGAGCATCACCAGAGCCTGAGAATCCTCACATCAAGAGAGGGATC
AAAGGCTTTGTTGAATTCCCAAGAGTGATTCGAGCAATAGGATCCAAAAACAGGCATTGGGGTACGAAGCTGGAGTGTCAAAAGGCACAGCTAAGGATTC
TTTTGAAACAAAAAAGCCCCATCAGATCCAACAATCTTATTATTTCATAA
AA sequence
>Potri.001G082600.1 pacid=42789414 polypeptide=Potri.001G082600.1.p locus=Potri.001G082600 ID=Potri.001G082600.1.v4.1 annot-version=v4.1
MEEVKVMMMSSLHHSMNESSPQDPITTTTCTSWKLYENPFYNSQHNIQHQHQQHCQSNKHLHHLPLSARKIAASFWDLTFFRPIMDTELDFARAQILDLK
AELEYERKARKKLETMSKRLAKELAEERRGREALARVCEELAREISCDKEEIDHMKREMEEERKMLRMAEVLREERVQMKLAEARMLFEEKLLELGGTTT
QTELHHNSASRMEQKYQEDKEAEISTPFKAAAILSSKLNRLVLSEKSCYDNSGADSKESTRVILSEMSSFNDKSRSISSMVIQRSRASPEPENPHIKRGI
KGFVEFPRVIRAIGSKNRHWGTKLECQKAQLRILLKQKSPIRSNNLIIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G64690 BLT BRANCHLESS TRICHOMES, branchle... Potri.001G082600
[exp]
0 1
AT3G03680 C2 calcium/lipid-binding plant... Potri.013G066400
[exp]
1.41 0.8965
AT1G65590 HEXO3, ATHEX1 beta-hexosaminidase 3 (.1) Potri.008G079400
[exp]
5.47 0.8877
AT5G58600 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44... Potri.001G278300
[exp]
6.48 0.8692
AT1G08590 Leucine-rich receptor-like pro... Potri.013G048800
[exp]
7.41 0.8974
AT1G12600 UDP-N-acetylglucosamine (UAA) ... Potri.014G077500
[exp]
10.00 0.8898
AT3G62630 Protein of unknown function (D... Potri.005G019600
[exp]
12.00 0.8742
AT1G09795 HISN1B, ATATP-P... ATP phosphoribosyl transferase... Potri.004G222400
[exp]
12.08 0.8315
AT4G19980 unknown protein Potri.003G110200
[exp]
12.32 0.8494
AT5G55730 FLA1 FASCICLIN-like arabinogalactan... Potri.011G093500
[exp]
13.74 0.8844
AT1G01110 IQD18 IQ-domain 18 (.1.2) Potri.012G022500
[exp]
15.49 0.8873

Potri.001G082600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.