Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24150 156 / 7e-42 GRF ATGRF8 growth-regulating factor 8 (.1) AT4G37740 103 / 2e-23 GRF ATGRF2 growth-regulating factor 2 (.1) AT3G13960 99 / 2e-22 GRF ATGRF5 growth-regulating factor 5 (.1) AT3G52910 93 / 2e-20 GRF ATGRF4 growth-regulating factor 4 (.1) AT2G22840 93 / 6e-20 GRF ATGRF1 growth-regulating factor 1 (.1) AT2G36400 92 / 1e-19 GRF ATGRF3 growth-regulating factor 3 (.1) AT2G06200 86 / 1e-18 GRF ATGRF6 growth-regulating factor 6 (.1) AT5G53660 87 / 2e-18 GRF ATGRF7 growth-regulating factor 7 (.1) AT2G45480 68 / 4e-12 GRF ATGRF9 growth-regulating factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G022600 [exp] 137 / 6e-35 AT5G53660 137 / 1e-35 growth-regulating factor 7 (.1) Potri.015G006200 [exp] 132 / 6e-33 AT5G53660 132 / 4e-34 growth-regulating factor 7 (.1) Potri.003G065000 [exp] 102 / 7e-24 AT3G13960 200 / 4e-61 growth-regulating factor 5 (.1) Potri.007G007100 [exp] 105 / 8e-24 AT2G22840 325 / 6e-104 growth-regulating factor 1 (.1) Potri.014G012800 [exp] 103 / 2e-23 AT2G22840 303 / 1e-95 growth-regulating factor 1 (.1) Potri.001G169100 [exp] 101 / 2e-23 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.018G065400 [exp] 101 / 3e-23 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.002G115100 [exp] 103 / 4e-23 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1) Potri.014G007200 [exp] 102 / 7e-23 AT2G22840 360 / 7e-118 growth-regulating factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033236 [exp] 201 / 8e-59 AT4G24150 151 / 1e-40 growth-regulating factor 8 (.1) Lus10008268 [exp] 194 / 3e-56 AT4G24150 156 / 3e-42 growth-regulating factor 8 (.1) Lus10020352 [exp] 106 / 5e-25 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 103 / 2e-23 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10037668 [exp] 95 / 9e-22 AT3G13960 156 / 1e-45 growth-regulating factor 5 (.1) Lus10015651 [exp] 94 / 1e-21 AT3G13960 155 / 5e-45 growth-regulating factor 5 (.1) Lus10014380 [exp] 93 / 4e-21 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10011558 [exp] 94 / 2e-20 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1) Lus10011559 [exp] 94 / 3e-20 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1) Lus10004455 [exp] 92 / 4e-20 AT3G13960 150 / 8e-42 growth-regulating factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [poplar] [flax] WRC WRC PF08880 [poplar] [flax] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Potri.001G082700.2 pacid=42788662 polypeptide=Potri.001G082700.2.p locus=Potri.001G082700 ID=Potri.001G082700.2.v4.1 annot-version=v4.1 ATGAGAAGTAGTTGGAGTAGGACTCGTAGTGGAGTTTTTGTGGATGATATTGGGTTGGGTTTAAGGATGCAAGATAACCTGGAATCTTGTAGTGGTAGTA GTAAGAGATCAGTGACGGCGATGTCTTGTGATCATGAACCAGCAGCTCATGAGTTATCATCTTCTTCTTGTAGTGGTGGTGGTGGAGGTAGTGGGCCACT GTTTTATAGCACAAGCAACCATGTTACTTGTCTTGGTGATATAAAAGACGTTGTAGCTTCCGTCTCTGCTTCTGGGACTGGTACTCCTGATGCAATAGCA GAGTCAAAATCGTTGCAGTACCCCTATTTTATCTCTGATTCTTCTCCTTTTACCTTCAATTCCTCAGGAGAAATGACACCATCTGTGAATGAGAGAGTGC TTTTTACAGCTGCTCAGTGGCAAGAACTTGAAAGACAAACCACGATTTACAAGTACATGATGGCTTCTGTTCCTGTCCCTCCTGAACTCCTTATACCCAT CACCAAAAATCAATCAAATGTCCTTCCTCCACGGTCTAACATGTTAACAGGTTCACTAGAACTGGGAATTCCTAGCCTGAACTCATCAGATGCAGAACCA TGGAGATGCAAAAGAACTGATGGGAAAAAATGGAGGTGTTCAAGAGATGTGGCACCTGACCAGAAATACTGTGAGAGGCACTCTCATAAGAGCCGTCCCC GTTCAAGAAAGCCTGTGGAATTACACACTCATGACTCCCCGAGGACATTGACCAACAATAACACTAACACCAACAATAGCAATTACTCCACTAATCCACA CCTGTTTAATCAAAAACCTTACTTTCCAAGCCATTTATTTATGTTTCCTAGTGCCATGGCCCCTTCTGCCAGCTCATATGATCAACCCAGGAGCTTGGAA TGGCTCTTGAAAGGCGAGATTTTACCCGTTGCCAGTAATTACAGCCAAGAATGGCAGCATTTGAAGAGAGACAGCATCAAGGGTAATGGCAAAGTGTACA ACGTTTATGGAGAAGAGCAGCCGCTTTGCTCAAATACATATAGAGGTGGCCATTCATTACAAGCTCAGAGGCTAAATGATCATTGCAGCGTGTTATCAAG TCCCAAATCAACTACTTTGGAAAGGGCTTTAAGTCCTAGCCTGACCCAAGAACAAGAGACAAGGCACTTCATTGATGCTTGGTCAACTAATTCAGGGAGA GACGACATTGGTGGGATTGGTAAAAAAAGTTACGTTTCTTCAAGTGAGAAGTTAGTATTGCCACATTCAGCTCTTACATTGTCAATGTCACCTGGCACTG GAAGTGAAACTAATAATGAAGGAAATGGGAGTGCTCAACTGAGTAGTTTTGGGATCATGGGATTATCAGATAGAGATCATCAGAGTGCGAGTGGCTTGAG ACCTCAGTGGATGATGAGTCATGGTGGTTCATGGATAGTATCACCACCTGGTGGACCATTAGCTGAAGCCTTGTGTCTTGGCATTTCCAGCAATGCAAAA ACTGCTTCCAATTTACCATCCCCTTGCAGCAGTAGCTGTGGCCCCAATTAA
AA sequence Show only first row Show all	>Potri.001G082700.2 pacid=42788662 polypeptide=Potri.001G082700.2.p locus=Potri.001G082700 ID=Potri.001G082700.2.v4.1 annot-version=v4.1 MRSSWSRTRSGVFVDDIGLGLRMQDNLESCSGSSKRSVTAMSCDHEPAAHELSSSSCSGGGGGSGPLFYSTSNHVTCLGDIKDVVASVSASGTGTPDAIA ESKSLQYPYFISDSSPFTFNSSGEMTPSVNERVLFTAAQWQELERQTTIYKYMMASVPVPPELLIPITKNQSNVLPPRSNMLTGSLELGIPSLNSSDAEP WRCKRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVELHTHDSPRTLTNNNTNTNNSNYSTNPHLFNQKPYFPSHLFMFPSAMAPSASSYDQPRSLE WLLKGEILPVASNYSQEWQHLKRDSIKGNGKVYNVYGEEQPLCSNTYRGGHSLQAQRLNDHCSVLSSPKSTTLERALSPSLTQEQETRHFIDAWSTNSGR DDIGGIGKKSYVSSSEKLVLPHSALTLSMSPGTGSETNNEGNGSAQLSSFGIMGLSDRDHQSASGLRPQWMMSHGGSWIVSPPGGPLAEALCLGISSNAK TASNLPSPCSSSCGPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Potri.001G082700 [exp]	0	1
AT1G11700			Protein of unknown function, D...		Potri.004G015700 [exp]	2.82	0.7843
AT2G36090			F-box family protein (.1)		Potri.006G208400 [exp]	6.40	0.7883
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Potri.004G085600 [exp]	8.06	0.6757
AT1G66330			senescence-associated family p...		Potri.017G129100 [exp]	13.49	0.7372
AT4G28190	ULT	ULT1	ULTRAPETALA1, Developmental re...		Potri.013G145400 [exp]	17.26	0.6327
AT1G76560		CP12-3	CP12 domain-containing protein...		Potri.002G002700 [exp]	18.02	0.7189
AT4G34200		EDA9	embryo sac development arrest ...		Potri.002G122700 [exp]	19.59	0.7323
AT1G60670			Protein of unknown function (D...		Potri.010G097000 [exp]	22.62	0.7492
AT1G68910		WIT2	WPP domain-interacting protein...		Potri.010G135900 [exp]	28.14	0.7220
AT4G27310	CO		B-box type zinc finger family ...		Potri.013G150500 [exp]	31.40	0.7134

Compare expression of checked genes

Potri.001G082700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.