Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19550 65 / 1e-12 zinc ion binding;transcription regulators (.1.2) AT3G09360 51 / 2e-07 Cyclin/Brf1-like TBP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G246100 [exp] 60 / 3e-10 AT3G09360 419 / 8e-140 Cyclin/Brf1-like TBP-binding protein (.1) Potri.009G039100 [exp] 59 / 6e-10 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006630 [exp] 53 / 2e-08 AT4G19550 42 / 6e-05 zinc ion binding;transcription regulators (.1.2) Lus10038957 [exp] 47 / 7e-06 AT3G09360 348 / 8e-113 Cyclin/Brf1-like TBP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07741 [poplar] [flax] BRF1 Brf1-like TBP-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G082800.2 pacid=42792980 polypeptide=Potri.001G082800.2.p locus=Potri.001G082800 ID=Potri.001G082800.2.v4.1 annot-version=v4.1 ATGGAGAAAGAAGTAAAATCTTCTTCCAAGACGCGTCTAAATTCCATCAAAGGTGGAGCTTCAGCATCGGGACAGTCTAAGAGAACTGGGAAGTTTAAAA GAAGTAAAGTAGCTTCTGTTTTCCACCTAAATGTGGAGAATGCCTCTAATTGGTTACAGAGAAATCAATCGAGGAGTACTGCAGCTGCTAATGACTCAGA AGATCTTAGTGACATCGATGATGCTGAGATTGCTGGATACCTTCTTCACAATGAGAAAGAGATGGAATTCAAAAGAACCCTTTGGGAAATGATGAACAAG AAATATTTGAAGGGGAACCAACTGAAAGGAGCTAGAAAGGTAAAGAAAAGAACACCTTCTAAGAAAGCCATTAAAATTGCTGGCCAGACAGAGAATAAGA CGAGATCGAGTTCGAAAATCAACTATGATGTCTTGAAGAAGCTATTGGATGATGGGCCTGAGGAGGTTCCTGGAAAGGTAGAAGACAGCAAACACTCTAA TGCCAGTTATGCTGACTCACAGCAGGTGGACGAGAACTCCATCCCTGAAGGACACGGTTCTGGTGCTAGTGAAGAAAATGACGAGCACGAACATGATTAT GGAGAGACTGATGCCGGAAACAATGACTACTACAATGATACGTATTTTGAAAATGAAGAGGATGATTATCACTACGCTGAGGATTATGACTGA
AA sequence Show only first row Show all	>Potri.001G082800.2 pacid=42792980 polypeptide=Potri.001G082800.2.p locus=Potri.001G082800 ID=Potri.001G082800.2.v4.1 annot-version=v4.1 MEKEVKSSSKTRLNSIKGGASASGQSKRTGKFKRSKVASVFHLNVENASNWLQRNQSRSTAAANDSEDLSDIDDAEIAGYLLHNEKEMEFKRTLWEMMNK KYLKGNQLKGARKVKKRTPSKKAIKIAGQTENKTRSSSKINYDVLKKLLDDGPEEVPGKVEDSKHSNASYADSQQVDENSIPEGHGSGASEENDEHEHDY GETDAGNNDYYNDTYFENEEDDYHYAEDYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19550			zinc ion binding;transcription...		Potri.001G082800 [exp]	0	1
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Potri.017G096900 [exp]	1.73	0.8700
AT4G10790			UBX domain-containing protein ...		Potri.003G145200 [exp]	4.00	0.7958
AT1G78530			Protein kinase superfamily pro...		Potri.011G101900 [exp]	13.92	0.8305
AT5G02920			F-box/RNI-like superfamily pro...		Potri.017G146500 [exp]	23.74	0.8239
					Potri.001G100550 [exp]	27.82	0.7459
AT4G10750			Phosphoenolpyruvate carboxylas...		Potri.003G145700 [exp]	30.13	0.8120
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Potri.002G259000 [exp]	33.57	0.7316
AT4G27640			ARM repeat superfamily protein...		Potri.010G169800 [exp]	34.64	0.7575
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Potri.001G334900 [exp]	42.07	0.6424
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294000 [exp]	42.89	0.7597

Compare expression of checked genes

Potri.001G082800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.