Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56140 1097 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 1096 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 1080 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56120 1038 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53440 726 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 707 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 683 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 669 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29740 649 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 639 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G148000 [exp] 1753 / 0 AT1G56145 1063 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.007G067900 [exp] 1201 / 0 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G135500 [exp] 729 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385600 [exp] 721 / 0 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 719 / 0 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G026325 [exp] 714 / 0 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385200 [exp] 712 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G106400 [exp] 710 / 0 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G063200 [exp] 701 / 0 AT1G29750 1019 / 0.0 receptor-like kinase in flowers 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031199 [exp] 1095 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005550 [exp] 712 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 697 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10041937 [exp] 647 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 646 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 634 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042505 [exp] 618 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 557 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 453 / 6e-145 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10026207 [exp] 359 / 2e-114 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G082900.1 pacid=42788450 polypeptide=Potri.001G082900.1.p locus=Potri.001G082900 ID=Potri.001G082900.1.v4.1 annot-version=v4.1 ATGGGATGGAGTGTAAAGCTGCTCCATTCTTCAGTCTTCGCTGTCTGCTCTTGCTGTCTTCACTTGTTCATCCTTCTTTCAGTCTTTCACTTGTCCAACG CTCAAAACGCCACTACTGATCCATCTGAAGTGAGTGCATTGAACTTATTATTTGAACAATGGGACACAAAAGCTGTGGGATTATGGAACTTAAGTGGAGA GCCATGCAGTGGATCTGCCATTAACGGCACCGATTTTGAAGACACTGCCAACAATCCTGCCATCAAATGTGTCTGTACCTACAATAATAGTGCTACATGT CACATTACTCAACTGAGAGTCTATGCTTTGAACAAAAGAGGGGAGATTCCAGAAGTAATTACGGCTTTGAAGTATCTTACCCTTCTGAAAATTGATCAAA ATTACTTCACCGGTCCATTGCCTGCATTTATTGGAAATTTAACTGCATTGCAGAGTTTGTCAATTGCGCATAATGCGTTTTCTGGGACCATTCCTACGGA GCTTGGAAATCTCAAGGAGCTAACTTTGCTGTCTATTGGTATAAATAATTTCTCAGGAACACTCCCTCCAGAACTGGGTCAACTTGTCAATCTTGAGCAA CTTTATGTGAATAGTTGTGGATTGGGTGGTGAAATTCCCTCAACATTTGTTAACCTTAAAAAAATGACAATCTTTTCGGCTTCAGATGCTGCTTTCACAG GCAACATACCTGACTTTATTGGCAACTGGACAAGGCTGACATCATTGAGATTTCAAGGGAATTCTTTTGAAGGTCCTATACCATCCAGTTTCTCCAACTT GACCTCACTGGAATCTCTGCGAATCAGCGATTTAAGCAATGTGAGCTCCACTCTTGATTTTATCAAGAACTTGAAGAGCTTGACCGACTTGACTCTGAGG AATGCATTGATTAGTGGTAGTATTCCATCTGATATTGGAGAAATATTCCAGACTCTAGATAGACTGGATTTAAGTTTCAACAATTTAACAGGCCAAGTTC CAAGTGCTTTATTCAATATGAGTTCTCTTCAATACTTGTTTCTTGGAAACAATAGTCTAATCGGAACCCTTCCTAACCAGAAGAGCAGTAAACTTCAGAC AATAGATTTGTCTTACAATTATCTGTCAGGGACTTTTCCTTCATGGGTAACCTCAAATATACAATTGAATTTAGTGGCCAACAACTTCACTTTTGACAGC TCAAATATAAGTGTTCTGCCAGGATTGAACTGTCTACAGAGAAATTTCCCATGCAATCGGAATCCTCCACTCTATGCAAATTTCTCAATCAAGTGTGGTG GTCCAATGATGAGAACTGCTGACGGCACAGTTTATGAAGCTGAAAATTCATCTATCAGTGCAGCATCATTCACTGTAACTAGCACTGAGAAATGGGCGGT GAGCAACGCAGGCTTGTACGCTGATAGAGAAAATCCTAGTTATGTTGAAAATAACTTGAAACAAGTTACCGGCACCAACACCCCAGAGCTCTATCAGACT TCAAGGATATCTCCTGGTTCACTTAGGTACTATGGCCTAGGTCTCCAGAATGGGCCTTACACTATAAATCTGTTATTTGCAGAAACTAGATTTGCAGCTC GAAGCTCACAAACCTGGGATAGTTTAGCACGACGTGTTTTTGATATCTATATTCAGGGAAACCGACAATTGAAGGACTTTGACATATCAATGGAGGCAGG TGGGGTCGACAGAGCAATTACAAAGACTTTTAACGTTACTGTGTCAGAAAATCATCTTGAAATTCACCTGTTTTGGGCTGGTAAGGGTACGTGCTGTAAC CCTGTACAAGGCTACTATGGACCAATCATTTCAGCCCTCAATGTTGTTCCAGATTTTACACCAAATGTTAGTGGGATACCATCCAGTACTCGAAAAGAGA AGAGCAGGACGGGGGTGATTGTTGGTGTTTCCATTTCTGTTGGAGTTGTGAGCTTGATCCTGATATCTGTACTTCTTTACATCAGGTTGAAAAAAGACAG CGAAGATGAGGAAGTGTTGCTTGGGATGGGCCCTAGACCAAACACTTTTAGTTATTCCCAGTTGAGGACTGCCACCGAAGACTTCAGCCCTTCAAATAAG CTAGGGGAAGGAGGATATGGACCTGTGTACAAGGGTATGCTTTCTGATGGGAGAGAAGTTGCTGTAAAGAAGCTTTCAGTAGCATCTAACCAGGGAACAA ATCAATTTGTGACGGAGATCGCAACCATATCGGCAGTTCAACATCGCAATCTTGTGAAATTGTATGGATGCTGCATTGAAGGAAATAGACGCCTCCTCGT TTATGAATACCTCGAAAACAAAAGCCTTGATAAGACACTCTTTGAAAAAGATGGCATGCATCTTGATTGGCCAACCCGCCTCAATATATGCCTGGGAACT GCTAGAGGGTTAGCTTATCTCCATGAGGAGTCAAGGCCAAGGATTGTACATAGAGATGTCAAGGCCAGTAACATTTTGCTTGATGCAAACCTCTTCCCCA AAATATCAGATTTTGGATTGGCAATACTCTATGATGACAAGAAAACTCACATCAGCACTCGAGTTGCAGGAACCATAGGCTATTTGGCACCGGAGTATGC AATGCGTGGACATCTGACAGAGAAGGCTGATGTTTTTGGTTTTGGTGTGGTTGCTCTGGAGATCCTGAGTGGGAGAGCAAATTCTGATTCTAGTTTGGAT GACGAAAGGGTCTATCTTCTCGAATGGGCGTGGAAATTGCATGAAAGTGGGCGAAGTTTAGAGCTGATGGATCCGAGTGTAACAGAATTCGATGAAAATG AAGCTCTTCGAGTTGTTGGAGTAGCTCTCTTGTGCACTCAAGGGTCACCAGCTATGAGGCCAACAATGTCAAGAGTTGTAGCAATGCTTACTGGAGATAT TGAAGTGAGTGCTGTTACATCAAAGCCAAGCTACTTGACTGATTGGGATTTTAAGGATATAACTGGCACCTTTTCGACTGAAAATACTCAAGCATCCACT TCATCCGAGGCTAGCAAGAGCAAGAATCACAATCCAATTGATCTTATTCCACGAGGTGATCAAATGCACTCTCCACTAAATGTCACTGAACCAAGGCTCA GTGACCTCATTGGGGATGGAAGGTGA
AA sequence Show only first row Show all	>Potri.001G082900.1 pacid=42788450 polypeptide=Potri.001G082900.1.p locus=Potri.001G082900 ID=Potri.001G082900.1.v4.1 annot-version=v4.1 MGWSVKLLHSSVFAVCSCCLHLFILLSVFHLSNAQNATTDPSEVSALNLLFEQWDTKAVGLWNLSGEPCSGSAINGTDFEDTANNPAIKCVCTYNNSATC HITQLRVYALNKRGEIPEVITALKYLTLLKIDQNYFTGPLPAFIGNLTALQSLSIAHNAFSGTIPTELGNLKELTLLSIGINNFSGTLPPELGQLVNLEQ LYVNSCGLGGEIPSTFVNLKKMTIFSASDAAFTGNIPDFIGNWTRLTSLRFQGNSFEGPIPSSFSNLTSLESLRISDLSNVSSTLDFIKNLKSLTDLTLR NALISGSIPSDIGEIFQTLDRLDLSFNNLTGQVPSALFNMSSLQYLFLGNNSLIGTLPNQKSSKLQTIDLSYNYLSGTFPSWVTSNIQLNLVANNFTFDS SNISVLPGLNCLQRNFPCNRNPPLYANFSIKCGGPMMRTADGTVYEAENSSISAASFTVTSTEKWAVSNAGLYADRENPSYVENNLKQVTGTNTPELYQT SRISPGSLRYYGLGLQNGPYTINLLFAETRFAARSSQTWDSLARRVFDIYIQGNRQLKDFDISMEAGGVDRAITKTFNVTVSENHLEIHLFWAGKGTCCN PVQGYYGPIISALNVVPDFTPNVSGIPSSTRKEKSRTGVIVGVSISVGVVSLILISVLLYIRLKKDSEDEEVLLGMGPRPNTFSYSQLRTATEDFSPSNK LGEGGYGPVYKGMLSDGREVAVKKLSVASNQGTNQFVTEIATISAVQHRNLVKLYGCCIEGNRRLLVYEYLENKSLDKTLFEKDGMHLDWPTRLNICLGT ARGLAYLHEESRPRIVHRDVKASNILLDANLFPKISDFGLAILYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEILSGRANSDSSLD DERVYLLEWAWKLHESGRSLELMDPSVTEFDENEALRVVGVALLCTQGSPAMRPTMSRVVAMLTGDIEVSAVTSKPSYLTDWDFKDITGTFSTENTQAST SSEASKSKNHNPIDLIPRGDQMHSPLNVTEPRLSDLIGDGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56140			Leucine-rich repeat transmembr...		Potri.001G082900 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G123400 [exp]	1.00	0.9816
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.008G164466 [exp]	2.00	0.9723
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.015G148200 [exp]	3.46	0.9722
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Potri.014G020700 [exp]	5.65	0.9574
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.001G302400 [exp]	6.32	0.9613
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.018G003800 [exp]	6.32	0.9665
AT5G07475			Cupredoxin superfamily protein...		Potri.003G150300 [exp]	8.24	0.9679
AT5G06490			RING/U-box superfamily protein...		Potri.010G243500 [exp]	8.36	0.9649
AT2G48130			Bifunctional inhibitor/lipid-t...		Potri.005G211900 [exp]	8.83	0.9664
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.004G185100 [exp]	10.48	0.9610

Compare expression of checked genes

Potri.001G082900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.