Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02800 594 / 0 ATCEL2 cellulase 2 (.1) AT4G02290 593 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G70710 526 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 526 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G71380 525 / 0 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G22880 522 / 0 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT4G39010 514 / 5e-180 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 457 / 9e-158 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT4G09740 450 / 3e-155 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G23560 446 / 1e-153 ATGH9B15 glycosyl hydrolase 9B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202400 [exp] 612 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.003G147600 [exp] 611 / 0 AT1G02800 432 / 3e-150 cellulase 2 (.1) Potri.014G126900 [exp] 593 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.008G132700 [exp] 537 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.010G109200 [exp] 533 / 0 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.009G123900 [exp] 528 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.004G162200 [exp] 527 / 0 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.019G069300 [exp] 526 / 0 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.015G127900 [exp] 475 / 9e-165 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001666 [exp] 730 / 0 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10008208 [exp] 599 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 579 / 0 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10029071 [exp] 531 / 0 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10025880 [exp] 521 / 0 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10018077 [exp] 513 / 1e-179 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 507 / 4e-177 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10002930 [exp] 480 / 7e-167 AT1G71380 706 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10013418 [exp] 472 / 4e-164 AT4G02290 625 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10017525 [exp] 470 / 2e-162 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.001G083200.1 pacid=42790180 polypeptide=Potri.001G083200.1.p locus=Potri.001G083200 ID=Potri.001G083200.1.v4.1 annot-version=v4.1 ATGGCTAATGCCACTACATTTTCACTAATGTTGCAGTTTTTCTTCATAACTTTTTGTTGTCTGAGCTATTTTAGCTTTGCCTTCACTTCTCAAGACTATG CTAATGCTCTTGAAAAATCTATCCTCTTTTTTGAGGGTCAGAGGTCAGGCAAATTGCCGTCTAACCAACGGCTAACATGGAGGGGGGACTCTGGGTTGTC TGACGGTTCTACTTATCACGTGAACCTAGTTGGTGGTTACTATGATGCGGGTGATAATGTCAAGTTTGGCCTTCCAATGGCCTTCACAACTACATTGTTG GCATGGAGTGTCATTGAATTCGGTAGCTCGATGCAGAATCAGATTGAAAATGCCAAAGCAGCCATTCGGTGGAGCACTGACTACCTTTTAAAAGCAGCCA CTGCCACCCCTGACACACTATATGTTCAAGTTGGAGATCCAAACATGGATCACCGGTGCTGGGAGAGGCCAGAAGACATGGACACACCACGCAATGTGTA CAAAGTAACCATCCAGAACCCGGGATCTGATGTGGCTGCCGAGACAGCTGCTGCATTGGCTGCAGCTTCAATTGTTTTCAAAGAGTCTGACCCTTCTTAC TCTACCAAATTGCTTCATACGGCAATGAAAGTATTCGATTTTGCAGACAGGTATAGAGGTTCTTATAGCAACTCCCTCAATTCAGTAGTCTGCCCATTTT ACTGCTCTTACTCGGGATACCAAGATGAGCTTCTTTGGGGTGCATCATGGATTCATAGAGCGTCACAGAACGGGTCATACTTGACTTACATCCAGTCAAA TGGTCACACGATGGGTTCTGATGATGACGACTACTCCTTTAGTTGGGATGACAAGCGACCTGGGACTAAGATTCTTCTTTCCAAGGAATTCTTGGAGAAA ACTACTGAAGAATTTCAATTATATAAATCGCATTCAGACAACTATATATGCTCTCTAATTCCAGGAACTTCTAGTTTCCAGGCCCAATATACACCCGGGG GGCTTTTTTACAAAGCAAGTGAAAGCAATCTGCAATATGTAACCTCCACAACTTTCCTTCTATTGACATATGCCAAGTATCTTGGCTCAAATGGAGGAGT TGCCAGATGCGGTGGTTCAACCGTGACAGCAGAGTCGCTCATCGCACAGGCGAAGAAGCAGGTGGACTATATCTTAGGTGATAATCCAGCAAGGATGTCT TACATGGTTGGATTCGGTAATAGGTATCCGCAACATGTTCATCACAGGGGTTCCTCGGTGCCATCTATACACGCACACCCGAATCGCATTTCCTGCAACG ATGGGTTTCAGTTCCTCTACTCCAGCTCTCCCAATCCGAATGTCCTTGTTGGAGCCATAATAGGCGGTCCTGATAACAGAGACAATTTCGCTGATGATCG AAACAACTATCAGCAATCCGAGCCAGCTACGTATATCAACGCACCATTTGTTGGTGCTCTCGCTTTCTTCTCAGCCAAAAATTAA
AA sequence Show only first row Show all	>Potri.001G083200.1 pacid=42790180 polypeptide=Potri.001G083200.1.p locus=Potri.001G083200 ID=Potri.001G083200.1.v4.1 annot-version=v4.1 MANATTFSLMLQFFFITFCCLSYFSFAFTSQDYANALEKSILFFEGQRSGKLPSNQRLTWRGDSGLSDGSTYHVNLVGGYYDAGDNVKFGLPMAFTTTLL AWSVIEFGSSMQNQIENAKAAIRWSTDYLLKAATATPDTLYVQVGDPNMDHRCWERPEDMDTPRNVYKVTIQNPGSDVAAETAAALAAASIVFKESDPSY STKLLHTAMKVFDFADRYRGSYSNSLNSVVCPFYCSYSGYQDELLWGASWIHRASQNGSYLTYIQSNGHTMGSDDDDYSFSWDDKRPGTKILLSKEFLEK TTEEFQLYKSHSDNYICSLIPGTSSFQAQYTPGGLFYKASESNLQYVTSTTFLLLTYAKYLGSNGGVARCGGSTVTAESLIAQAKKQVDYILGDNPARMS YMVGFGNRYPQHVHHRGSSVPSIHAHPNRISCNDGFQFLYSSSPNPNVLVGAIIGGPDNRDNFADDRNNYQQSEPATYINAPFVGALAFFSAKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02800		ATCEL2	cellulase 2 (.1)		Potri.001G083200 [exp]	0	1
AT3G59850			Pectin lyase-like superfamily ...		Potri.007G144200 [exp]	2.44	0.8227
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G005800 [exp]	4.24	0.7691
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125851 [exp]	14.76	0.7952
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G006200 [exp]	14.96	0.7273
AT5G05340			Peroxidase superfamily protein...		Potri.013G154400 [exp]	19.74	0.7904	Pt-PRX1.9
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G117100 [exp]	22.09	0.7850
AT4G27290			S-locus lectin protein kinase ...		Potri.001G414200 [exp]	26.26	0.7347
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.004G042600 [exp]	26.83	0.7246
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.007G049900 [exp]	33.67	0.6963	IFS1.30
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.016G088000 [exp]	34.64	0.7228

Compare expression of checked genes

Potri.001G083200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.