Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64680 383 / 6e-136 unknown protein AT1G03055 173 / 3e-53 unknown protein AT4G01995 134 / 3e-38 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046500 [exp] 169 / 1e-51 AT1G03055 258 / 3e-86 unknown protein Potri.005G216400 [exp] 169 / 6e-51 AT1G03055 235 / 8e-77 unknown protein Potri.002G194500 [exp] 141 / 1e-40 AT4G01995 285 / 3e-97 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017338 [exp] 399 / 8e-138 AT1G02800 390 / 1e-130 cellulase 2 (.1) Lus10001667 [exp] 359 / 5e-127 AT1G64680 339 / 1e-119 unknown protein Lus10018752 [exp] 180 / 2e-55 AT1G03055 230 / 5e-75 unknown protein Lus10024837 [exp] 181 / 7e-55 AT1G03055 229 / 1e-73 unknown protein Lus10012004 [exp] 135 / 4e-38 AT4G01995 283 / 9e-96 unknown protein Lus10016264 [exp] 103 / 6e-26 AT4G01995 215 / 3e-69 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13225 [poplar] [flax] DUF4033 Domain of unknown function (DUF4033)
Representative CDS sequence Show only first row Show all	>Potri.001G083300.1 pacid=42788295 polypeptide=Potri.001G083300.1.p locus=Potri.001G083300 ID=Potri.001G083300.1.v4.1 annot-version=v4.1 ATGGTGGCTCTAAGCAGCCTCCAAGTTGTCCAGTTTAGACCTCCACAAGATCTTTCATTACATAAATGTAGACCAAGAAGTTTCATCAAGTGTAGGATTG CAGAGCCAACAGGAGAACCGGCCCCTTTAGGACAAAAAACAAAATACATGGATGGGTTCTTTGAGAAAGCGTTCATGACTCTATTTGCTAGAAAGATGGA GAAGTTTGCGGCTCCTGCAAAAAATGGTTCTGCGAGTAAAGAGAAGGGGTGGTTTGATTATGATTATGAGAGTTTTGTTGATGTTTCAAAGAGAGTGATG CAAGGAAGAAATCGCAAGCAGCAACAAGAAGTGGTTCGTGAGGTTCTCTTGTCTATGCTCCCTCCAGGTGCTCCTGAGCAGTTCAAGAAATTGTTTCCAC CTACAAAATGGGCTGCAGAATTCAATGCTGCATTGACTGTTCCTTTCTTCCAGTGGTTGGTTGGGCCTTCTGAGGTTGTGGAAGTGGAGGTAAATGGGGA GAAGCAAAAAAGTGGAGTACATATAAAGAAATGCAGGTACCTTGAGAATAGTGGATGTGTAGGAATGTGTGTGAACATGTGCAAGATTCCTACTCAAGAC TTCTTCACTAATGAATTCGGGCTTCCATTAACTATGATACCTAATTTTGAAGATATGAGTTGCGAAATGGTTTACGGCCAAGTTCCACCCCCATTTGAAG AGGATCCAGTAGTAAAACAGCCTTGTCTTGCAGATATTTGCACCATAGCAAGTCCCAACTCAAGTTTTTGTCCCAAGTTAGAAGCTTGA
AA sequence Show only first row Show all	>Potri.001G083300.1 pacid=42788295 polypeptide=Potri.001G083300.1.p locus=Potri.001G083300 ID=Potri.001G083300.1.v4.1 annot-version=v4.1 MVALSSLQVVQFRPPQDLSLHKCRPRSFIKCRIAEPTGEPAPLGQKTKYMDGFFEKAFMTLFARKMEKFAAPAKNGSASKEKGWFDYDYESFVDVSKRVM QGRNRKQQQEVVREVLLSMLPPGAPEQFKKLFPPTKWAAEFNAALTVPFFQWLVGPSEVVEVEVNGEKQKSGVHIKKCRYLENSGCVGMCVNMCKIPTQD FFTNEFGLPLTMIPNFEDMSCEMVYGQVPPPFEEDPVVKQPCLADICTIASPNSSFCPKLEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64680			unknown protein		Potri.001G083300 [exp]	0	1
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Potri.008G063800 [exp]	1.41	0.9890
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016000 [exp]	1.73	0.9857
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.019G118500 [exp]	2.00	0.9871	PETC.1
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Potri.003G113500 [exp]	3.87	0.9827
AT1G67700			unknown protein		Potri.010G053600 [exp]	4.24	0.9823
AT1G79040		PSBR	photosystem II subunit R (.1)		Potri.011G142200 [exp]	4.89	0.9833
AT1G44920			unknown protein		Potri.002G114900 [exp]	5.19	0.9810
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Potri.004G175800 [exp]	7.00	0.9815	Pt-HPR.1
AT2G03420			unknown protein		Potri.010G161400 [exp]	8.48	0.9769
AT3G47070			unknown protein		Potri.001G249600 [exp]	8.83	0.9721

Compare expression of checked genes

Potri.001G083300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.