Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24140 619 / 0 BDG3 alpha/beta-Hydrolases superfamily protein (.1) AT1G64670 582 / 0 CED1, BDG1 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1, BODYGUARD1, alpha/beta-Hydrolases superfamily protein (.1) AT5G41900 553 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G17780 325 / 4e-107 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G17720 305 / 1e-98 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 53 / 2e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24160 50 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G36530 49 / 6e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38520 49 / 7e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G13820 46 / 4e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G147400 [exp] 904 / 0 AT4G24140 615 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 50 / 3e-06 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G027300 [exp] 50 / 3e-06 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G235200 [exp] 49 / 7e-06 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G158800 [exp] 48 / 8e-06 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G219700 [exp] 48 / 1e-05 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 45 / 6e-05 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G201500 [exp] 44 / 0.0001 AT1G52510 584 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 43 / 0.0003 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033234 [exp] 702 / 0 AT4G24140 587 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10008266 [exp] 694 / 0 AT4G24140 582 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10013629 [exp] 305 / 7e-99 AT5G17780 430 / 8e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003871 [exp] 296 / 4e-95 AT5G17780 429 / 2e-148 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024310 [exp] 50 / 3e-06 AT4G24160 663 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028315 [exp] 48 / 1e-05 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 47 / 4e-05 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10031137 [exp] 43 / 0.0007 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.001G083400.1 pacid=42789393 polypeptide=Potri.001G083400.1.p locus=Potri.001G083400 ID=Potri.001G083400.1.v4.1 annot-version=v4.1 ATGTCTTTGTATTTGTGTCTCTGGGGTCTAATCAACTATTTGAAGTGGGTAGTAGTGATGCCTCTTGGTGAAATGGCTGTAATGGGAAAAACCATGATGG TTTTAACATTAACAGGCAGGGTTTTACATGATGCTGTGAGCTTCATTGTCTTCTCTTTTCTAGACATCCTTGATCTCGTTCTATGCTTTGCATTCAAAGC TGCGGATTTCATCATTGAAGCTGAATGGAAACCTTGTTATTGTGCCTCAGCTAAGGAAGCCATAACTAGTAGTGGCAAGATCTTGGTCTCTGAACAAGGT GAGTCCAAAATTGTTTGCCTTACTTCTACCAAGTTAAGGTTAGAAGAGATCTCCGACACTCTTTACACTCGTACTTCATTAGTGTCTGAGATTTCAAAAT CAACGGTTAATGAGCTCAAGCGAATCAAGGTGGAGGGTAAGTCCAGTACTGTCACTGTACAGACATCCGAGAAGATCAAGAAAGGAACTATGAGATCCAC ATTAACTGTCAGCTCTACCATTGTTGAAATGCTTCAAGGGAAGATTGGAGGCCAGCACTTACATCCCATTTCAAGATGGTCTGATTGTGATTGCAAATTT TGCACTTCATGGACCTCTTCTAGCAAAGAAACCCTCTTCGTTAGGGCTGAAGGACCTAAAGATAAGGGAAAAGGAGATGTCCTCTTCATTCATGGATTCA TTTCATCTTCAGCATTTTGGACAGAGACATTATTTCCAAACTTCTCACATGCAACTAAATCAACCTACCGATTATTTGCCATCGATCTATTAGGGTTTGG GAGGAGCCCTAAGCCAGCTGACTCCCTTTACACATTAAGAGAGCATTTGGACATGATTGAACAATCCGTTCTTGAACCATACGAAGTCAAATCCTTCCAC ATTGTTGCTCATTCTTTAGGCTGTATTTTGGCCCTAGCACTTGCCGTGAAACACCCTGGCTCGGTCAAGTCCTTGACTCTCCTTGCACCACCATATTACA AAGTACCAAAAGGTGTCCGAGCAACACAGCATGTGATGAGACAAGTAGCTCCAAGGCGTGTTTGGCCACTGATCACATTTGGTGCATCGATAGCGTGCTG GTATGAGCACATCAGCAGGGCAATTTGCCTTGTCATATGCAAAAATCATCGGTTGTGGGAGTTCCTTACCAAACTAGTCACAAGAAACAGGATCAAGACA TTCTTAATTGAAGGGTTCTGTTGCCACACCCACAATGCTGCATGGCACACCCTACACAACATCATTTGTGGCACCGGCAGCAAGCTCGAAGGGTACTTGG ATTCAGTCCGTGACCACCTCAAGTGTGATGTCAATATCTTCCACGGAAAAAAAGATGAGGTTATCCCAGTTGAATGTAGCTACAATGTTCAGCATAAAGT CCCTCGTGCTCGAGTTAAGGTCATTGATGATGAAGATCATATTACGATTGTTGTTAATAGACAAAAGGCGTTTGCTAGGGAACTTGAAGAGATTTGGAAG AGATCAAGTGGTTAA
AA sequence Show only first row Show all	>Potri.001G083400.1 pacid=42789393 polypeptide=Potri.001G083400.1.p locus=Potri.001G083400 ID=Potri.001G083400.1.v4.1 annot-version=v4.1 MSLYLCLWGLINYLKWVVVMPLGEMAVMGKTMMVLTLTGRVLHDAVSFIVFSFLDILDLVLCFAFKAADFIIEAEWKPCYCASAKEAITSSGKILVSEQG ESKIVCLTSTKLRLEEISDTLYTRTSLVSEISKSTVNELKRIKVEGKSSTVTVQTSEKIKKGTMRSTLTVSSTIVEMLQGKIGGQHLHPISRWSDCDCKF CTSWTSSSKETLFVRAEGPKDKGKGDVLFIHGFISSSAFWTETLFPNFSHATKSTYRLFAIDLLGFGRSPKPADSLYTLREHLDMIEQSVLEPYEVKSFH IVAHSLGCILALALAVKHPGSVKSLTLLAPPYYKVPKGVRATQHVMRQVAPRRVWPLITFGASIACWYEHISRAICLVICKNHRLWEFLTKLVTRNRIKT FLIEGFCCHTHNAAWHTLHNIICGTGSKLEGYLDSVRDHLKCDVNIFHGKKDEVIPVECSYNVQHKVPRARVKVIDDEDHITIVVNRQKAFARELEEIWK RSSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.001G083400 [exp]	0	1
AT3G55090		ABCG16	ATP-binding cassette G16, ABC-...		Potri.010G213400 [exp]	1.00	0.9760	2
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G116900 [exp]	1.41	0.9731
AT3G49950	GRAS		GRAS family transcription fact...		Potri.007G053500 [exp]	1.73	0.9712
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G089000 [exp]	2.00	0.9674
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.006G097800 [exp]	2.23	0.9511
AT4G00400		AtGPAT8, GPAT8	glycerol-3-phosphate acyltrans...		Potri.014G085500 [exp]	2.64	0.9501
AT1G30700			FAD-binding Berberine family p...		Potri.001G462300 [exp]	7.48	0.9488
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G087000 [exp]	13.52	0.9205
AT5G67070		RALFL34	ralf-like 34 (.1)		Potri.014G026900 [exp]	16.24	0.9195
AT5G44130		FLA13	FASCICLIN-like arabinogalactan...		Potri.013G120600 [exp]	19.59	0.9350

Compare expression of checked genes

Potri.001G083400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.